RNA id: AMCG00018099


Basic Information

Item Value
RNA id AMCG00018099
length 1631
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00018099
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1756664 ~ 1769934 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGGGAGATCAATGAAGGTTCAGTTCCTCCCTATTACAGAGAAGTGTACGAGGCCATATGCAGCAAGAAAGATGAACGGGTGCAAATTGACGTTTTTCAAAGGCTGCTGAACAAGACGGACCTTCCCGGTTCAGTGCAGAGCCAGATTTCTGAGCAAGTGGACCTGAAGGAGGGATCCCTGTCCAAGCTGTCTCTGTATAAAGCCCTGGCCCTGATCGCTTTGGCTCAGCAGGGGAAAAACCCCAGCCCAGCGCTGCTGGAGAACTGCATTCGAGAGTTCCCGAAGCCCCAGCTGGGAGATCTGAAGGAGCTGCCGGGTCTCAGGATGCAGCCCGCCTCGGGGAGCCCCCTGGTCCTGTCCCAGAGCCTGGCCCAGCTGctggagagagacacagtgaaaGTGGAGCTCATCCCAGAGAAGAAAGGCCTCTTTCTCAAGCACGTGGAGTATGAGGTCACCAGTCAGCGTTTAAAAACGTCCGTCTATCGGAGGTACAGCGACTTCGATGTTTTCCAcgagctgctgctgcagaggtTTGCCTACAGGATGGTGCCGGCGCTCCCGCCCAAACGGATGCTCAAAGGAGTCCTGACCTCCAACTCGGATCGGGACTTCATCAAGGGCCGGTGCCGCGCTCTCCGCAGATTCATCAACCTGGTGGCGCGGCACCCGAGCTTCTCCGAGGACGAGCTCGTCAAGATCTTCCTGACCTTCAGCGGCTCGGACGTTCAAAACAAACTGCGGGAGGCCTTCAAGAAAACTGGTGACGAATTCCTGACCTGCAGGATTTCCACACAGGCCAAGGAGTACCTGCCCGCCGACATCCAGGTCCACACCCTGGGCTCGGACGCCCTGCCGGTCCCATCTCTCACCTCCACCAACAACACCTGGGCGGCACTGCGCCCGTCCCTGAAGGGCCTGTCCGGGGAGTTCGCGCAGCTGGCCGACAAAGCGGCACAACAGGGGAGGAGAGAAGCGGACAATGTCGTGGAGAAACTGAACCTCTTCCTGGATCTACTGCAGTCGTACAAAGACCTGTGTGAGAGGCACGAGCGCGGCGTCCTGCATGAGCACCAGCGCGCGCTGCAGAAGTACAGCGTCATGAAGCGGCAGATGATGTCGGCGACGGTGCAGAGTAGGGAGCCGGTGACCGTGGAGCAGCTGGAGTCGCGCATCGTGCAGCAAGAGAACGCCATCCTCACCATGGAGCTGCGCAACTACTTCTCCCTGTTCTGTCTGCACCAGGAGACGCAGCTCATCTACACCTACCTGCCCATCACCGCGCACATCCTGGCGGTGTTCGTCAGCTCCCACATCCAGGGACACCGAGAGATGAGCGAGGTGTGGAACGACCTGCAGCCGAAGCTCAGCTGCCTGTTCGGGGGGTCCAACGGCGTGCTGCCCCCCCCCGCCGCCCTCCTGCCTCATTAACCAGCAAagagccccccaccccccagcacCGCTGTTGGCAGCATGGCTCCTCTGGCCAGGGGGTGGGTGGTGCGCTACAACGCCGGCACACACCAGCAACCGAGGGATATGGCACGGCCAGGACAGAGCTGCTCTTAAATGAGCTTCTACAggggaattaaaaaagaaacgatttttatatatatatatatata

Function

GO: NA

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143110 lncRNA downstream 221679 1533456 ~ 1534985 (-) True G114286
TU143095 lncRNA downstream 243022 1512993 ~ 1513642 (-) True G114273
TU143085 lncRNA downstream 487848 1268293 ~ 1268816 (-) True G114264
TU143020 lncRNA downstream 590171 1162890 ~ 1166493 (-) True G114213
TU142981 lncRNA downstream 843023 913231 ~ 913641 (-) True G114183
TU143140 lncRNA upstream 72209 1842143 ~ 1878375 (-) False G114304
TU143216 lncRNA upstream 213718 1983652 ~ 1984149 (-) True G114363
TU143220 lncRNA upstream 215215 1985149 ~ 1985721 (-) False AMCG00018113
TU143345 lncRNA upstream 598496 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 866567 2636501 ~ 2647811 (-) False AMCG00018142
AMCG00018101 mRNA downstream 7644 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018098 mRNA downstream 8083 1746150 ~ 1748581 (-) True AMCG00018098
AMCG00018100 mRNA downstream 10764 1739851 ~ 1745900 (-) True AMCG00018100
AMCG00018093 mRNA downstream 78319 1677834 ~ 1678345 (-) True AMCG00018093
AMCG00018095 mRNA downstream 93505 1639671 ~ 1663159 (-) True AMCG00018095
AMCG00018103 mRNA upstream 90579 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018108 mRNA upstream 178055 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018107 mRNA upstream 205263 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018113 mRNA upstream 216362 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018111 mRNA upstream 237411 2007345 ~ 2028977 (-) True AMCG00018111
TU142989 other downstream 829925 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 829925 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1314240 441085 ~ 442424 (-) True G114021
TU143224 other upstream 215215 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 236972 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 511766 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 839211 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2290877 4060811 ~ 4064248 (-) False G114838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_02873360_02887683.mRNA True 1914 mRNA 0.46 12 CI01000046 2872981 ~ 2887683 (-)