RNA id: TU143166



Basic Information


Item Value
RNA id TU143166
length 453
lncRNA type sense_over
GC content 0.51
exon number 3
gene id AMCG00018105
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1972838 ~ 1973924 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCCGGGTGAGCAGGTGGAGTCGCGCGGGTTTGTCAGTAATTTTAATTCCGCAGCACAATGTCAACCGCGATGAATTTCGGCACTAAGTCGTTCAAGCCTCGGCCGCCAGACAAAGGCTCTTTCCCTTTAGATCACTTTGGCGAATGTAAAGATTTCAAGGAGCGGTTTATGAAGTGCCTCCAGCAAAACAACTACGAAAGCAGTCTGTGTCGGGAGCCAAGCAAGGCATACCTTCAGTGCAGGATGGACAGCTGATGGCCAAAGAGCCCCTGGAGAAACTGGGCTTCAGAGACGGCGCAGACGCTGCCGGGCCGGGGTCAGAGGTGGGCTCCTGAAGACCACCCACCGCCGGGAGCAGGGGGCCTGGAGTCCCACCCCACACTTCTccactatatgtatataatgtctTATATTTAATAGCCTATATTaaaagtgtacattttatatttga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143164 lncRNA upstream 2517 1969780 ~ 1970409 (+) True G114326
TU143161 lncRNA upstream 19662 1952874 ~ 1953264 (+) True G114323
TU143160 lncRNA upstream 21327 1951215 ~ 1951599 (+) True G114322
TU143159 lncRNA upstream 22426 1950261 ~ 1950500 (+) True G114321
TU143130 lncRNA upstream 107356 1864557 ~ 1865570 (+) True G114299
TU143178 lncRNA downstream 9968 1983651 ~ 1984150 (+) True G114332
TU143197 lncRNA downstream 33223 2006906 ~ 2021630 (+) True G114346
TU143212 lncRNA downstream 74888 2048571 ~ 2050177 (+) True G114359
TU143296 lncRNA downstream 288993 2262676 ~ 2266751 (+) False AMCG00018119
TU143377 lncRNA downstream 436794 2410477 ~ 2412789 (+) True G114484
AMCG00018102 mRNA upstream 126016 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018104 mRNA upstream 170698 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018096 mRNA upstream 193267 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018097 mRNA upstream 220861 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018091 mRNA upstream 461554 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018106 mRNA downstream 6503 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018115 mRNA downstream 106501 2080184 ~ 2095126 (+) True AMCG00018115
AMCG00018114 mRNA downstream 121872 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018116 mRNA downstream 142932 2116615 ~ 2118790 (+) True AMCG00018116
AMCG00018121 mRNA downstream 226752 2200435 ~ 2203330 (+) True AMCG00018121
TU143157 other upstream 23333 1947841 ~ 1949593 (+) True G114320
TU143029 other upstream 752710 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 1093947 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 1178136 777383 ~ 794790 (+) True G114123
TU142800 other upstream 1393222 575260 ~ 579704 (+) False G114053
TU143170 other downstream 3321 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 5363 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 5363 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other downstream 5363 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other downstream 5363 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile