RNA id: AMCG00018108


Basic Information

Item Value
RNA id AMCG00018108
length 2323
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00018108
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1947989 ~ 1970490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACCATCGAATGGACGCGTTTGTTTGCGACACAGGAGTGTTTCAAGCTGCTGGATTTGCACAGGCTTGCGGTTCCTCTGTGCGGGGAGGAAGAAGTGACCACTGGAGGTCTCGCTTGCTGAGCGCAGCGCGAACACGGAAaaggtgcagagagagagagagagagagagagagagagagagagcaggagcgGGTCACTGGAGGGAGCTCTGCAGCCGCCGCCTCTCATGCATTTCTCAAGACAATGAAGTGAAGCGCTGAacctccactctctctctccagtgcaTCCGTATCTGATTGGTCTTTGCCTTGAGCTCAACATCAAGACAACTTGAACCAAAACCGGTGCGCTACACCCCCCACCCGAGCGAGCATGGCCGGGGAGCAGGACAAGAACAAGCGGGCTCTGCAGGAGCTGCTGGGCAGACCCGGCAACGGCGCCTGCGTGGACTGCGGGGCTGCAGgtCCGGACTGGGCCTCGTTCACGCTGGGCGTGTTCATCTGCCAGAACTGCTCCGCCATCCACAGGAACATCCCCCACATCAGCAAAGTGAAGTCCGTGCTGCTGGACGCCTGGCAGACCGCTGAAGTTGAGTTCATGGCCACCGTGGGAAACCGCGCGGCTCAGGCTCAATATGAGCAGAAGGTGCCCCCGTTCTATTACAAGCCGACGTTTGCCGACGCCCAAATCCTACGGGAGCAGTGGATCCGGGCCCGCTACGAGAGGAACGAGTTTGTGCATGTCGAGAAGCAGGAGCCCTATTCTGCAGGATACAGAGAAGGGTTTCTGTGGAAACGAGGCCGAGACAATGGACAGTTTTTAAGCAGAAAATTCATCCTGTCCGAGCGTGAGGGGGCCTTGAAGTACTTCAACAAAAATGACGCCAGGGAGCCGAAGGCCTTCATGAAGATCGAGAGCCTGAACGCCACCTTCCTGCCGTCCAAAATTGGAAACGCCAACGGGCTGCAGATCACCTACCTGAAGGACAACAGCACCAGGAACATCTTCGTGTACCACGAGGACGGAAAGGAAATTGTCGACTGGTTCAACGCCATCAGAGCTGCCCGTTTCCACTACTTACAAGTGGCGTTTCCTGGGGCTAGCGATGCGGACctgGTGACGAAACTGACCAGAAACTTCCTGAAAGAGGGTTACATGGAGAAAACCGGTCCAAAGCACACAGAGGGCTTTAAGAAGAGATGGTTCACGATGGATGACAGAAGATTAATGTACTTCAAAGATCCCTTGGACGCCTACGCTCGCGGGGAAGTGTTCATCGGGAGCAAAGAGAACAACTACACGGTGCTGGCCGGCCTCCCGCCCTCCACGCAGGGGCAGCACTGGCAGTTCGGCATCACCATCGTCACTCCGGACAGGAAGTTCCTTTTCGCCTGCGAGACGGAGCTGGACCAGCGCGCCTGGATCGCTGCTTTCCAGAAAGTCATCAACCGGCCGATGCTCCCACAGGAGTACGCAGTGGAGGCGCACTTTAAACACAAACCCTGAGGAGTCGGGGGAGAGGACGGCCAGAGACGCCCCTCGGACCGGGCCGGAGACGACAGCTCGTCTGCGGAGCCGCTGTGGGGAAGACGgactcttttttttgtttacgaTGCTGGAGAAAACGGACCGAcgatttcatttaaatgaagttcaattaaattaaatctgtataaAGGCTCCAGGCATCGGCCGAGGGAGGGGTTGGCTGCTCTTCAGAgggaatgggggtgggggggcactaCTGGAGCCTGCGTGGACCCTCCCCCCCGCCTTCCCTTGCAAAACACACCCCCTCAGTCTGTGCCAACGTGGTCCACTCACGTACTGTACCTCCACCGTGGCTGTTGTTAAAATAGTACTTTAATTAATGTCGTCTAATGCAATTGGTGTCAGTTGAAAGTGATGTGTAACAAGCTATTAGCTGTCATAGCGTTTGCCTAAAAGCCTAGATACATTAATAGCGGTGTGAACACTGGAGAACATTAACCTACTACACAGGGTGGAGAGCGTGGTATTTATTGTGTCTGATATTTGTACataatcaggttttattttgctcAGGCCTGTGACCTTTTAATCTAGTGTGGGACTGTGAATTTCTTTTGTCTGACCGTTGCTAAACACAAACTCCATCGGCAAGCGCTCACATCTGGCCAGCTGTGTCCAGACCTGATGCGGGACTTCGCTGCAGGATGGACCAGAGGGTCCCGGCCTTCTGACACGCACTTGAACACTAGGACGGCCTCTTGCAGCTGGAATGCACGCATTGTTCTTAACAATCGAGACGgtctgtgttaaataaaaaacaatcctaCCCTG

Function

GO: NA

KEGG:

id description
K23781 ADAP, CENTA; Arf-GAP with dual PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143140 lncRNA downstream 69614 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 101218 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 413004 1533456 ~ 1534985 (-) True G114286
TU143095 lncRNA downstream 434347 1512993 ~ 1513642 (-) True G114273
TU143085 lncRNA downstream 679173 1268293 ~ 1268816 (-) True G114264
TU143216 lncRNA upstream 13162 1983652 ~ 1984149 (-) True G114363
TU143220 lncRNA upstream 14659 1985149 ~ 1985721 (-) False AMCG00018113
TU143345 lncRNA upstream 397940 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 666011 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 697970 2668460 ~ 2668661 (-) True G114554
AMCG00018103 mRNA downstream 73790 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 178055 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018101 mRNA downstream 198969 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018098 mRNA downstream 199408 1746150 ~ 1748581 (-) True AMCG00018098
AMCG00018100 mRNA downstream 202089 1739851 ~ 1745900 (-) True AMCG00018100
AMCG00018107 mRNA upstream 4707 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018113 mRNA upstream 15806 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018111 mRNA upstream 36855 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018110 mRNA upstream 62233 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018109 mRNA upstream 97156 2067646 ~ 2068026 (-) True AMCG00018109
TU142989 other downstream 1021250 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1021250 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1505565 441085 ~ 442424 (-) True G114021
TU143224 other upstream 14659 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 36416 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 311210 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 638655 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2090321 4060811 ~ 4064248 (-) False G114838

Expression Profile