RNA id: AMCG00018113


Basic Information

Item Value
RNA id AMCG00018113
length 1217
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00018113
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1985149 ~ 2006636 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTCTCACCCTGGGATCTGTGTGTATCAGGACCCGTATACTGTCTGCTTAGGTGGTTTGACAGAAAGATAACATCCGCCATAGAGGAGCAACAGTCCGTGCATCAAAACAAGTCGGTTGCAGTTCCCAGAAAACGCTGGGAGGTCAGACAGCTGTCCACCATGGCCACTGAAGAGGGTCTGCTCCAGATGGTCAGTGTAGCCCTGCTGGCGGCGCTGCTGGTCCTGGTCCTGATCCATGTCCTGATCCACGTCTTCCCTGCGGCCGGCTCGTCTGCTCTGAAAGCGCCCCCGGGCCCCTTTCCGCTGCCCATCATAGGGAATCTGCACCAGCTGGATTTGAAAAGGCCCTACAGGTCCCTCATGCAGTTGTCTAAGAAATACGGCAGTGTGTTTACTATCCACCTGGGCCCGAGGAAGGTGGTGGTTCTGGCGGGATACGAAACCGTGAAGGACGTGCTCATTAACCACGCGGAGGAGTTTGGGGACAGAGACATGCTGCCAGTGTTTTATGATTCCAGTGAAGGACATGGTGTGCTTTTTGCAAACGGGGAGTCCTGGAAGGAGATGAGGAGGTTTTCTCTGTCTAATATGCGGGATTTCGGGATGGGAAGGAAAGGAAGTGAGGAAAAGATCATGGAAGAAATGAACTACCTGTCTGAGGTCTTTGAACAACAGGGAGGCAAACCATTTGACGTGAAGGACCCAGTGAATCGTGCGGTTTCGAACATTATATCGTCCATAGTGTACGGCACCAGGTTTGATTATGACGACCCGGTTTTTCAGGCCATGGTTAACAAAGCGAATGAGAGGGTCAGTCTCTCGATGTCACCTCAAATGCAGTTGTACAATGCCTTCCCCTTCCTGGGGTTCTTACTGAGAGACAGGAGGGCATTTCGGAACATCGTTAAGGAAAACCTGGCCAATATCAGAGGCTTTGTGAGGGAACTGCAGATGTCCTTAAACGTGAATGACAAGCGGGGGCTGATCGATTCGTTTCTGATCCGGCAGCAACAGGAATCTGGGCAGGAGGGTTCGCATTTCCATGAGCTCAATCTGATCCACATTGTGTCCAACCTCTTCGTCGCCGGCACCGACACCACCAGCACCACTCTGCGCTGGGGGCTGCTGCTCATGGCCAAGTACCCCCACATCCAGGGTAAGGCGGGTGGGCCTGAGGATGGGGAGCCCAAACAAACCCAATACACATGCAGCTGA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0031090 organelle membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 575 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 2147 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 107921 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 139525 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 451311 1533456 ~ 1534985 (-) True G114286
TU143345 lncRNA upstream 377875 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 645946 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 677905 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 1005480 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 1086486 3077041 ~ 3077760 (-) True G114681
AMCG00018107 mRNA downstream 7477 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 15806 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018103 mRNA downstream 112097 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 216362 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018101 mRNA downstream 237276 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018111 mRNA upstream 16790 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018110 mRNA upstream 42168 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018109 mRNA upstream 77091 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018112 mRNA upstream 81998 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018118 mRNA upstream 115050 2105605 ~ 2110667 (-) True AMCG00018118
TU142989 other downstream 1059557 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1059557 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1543872 441085 ~ 442424 (-) True G114021
TU143230 other upstream 16351 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 291145 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 618590 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2070256 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2595507 4586062 ~ 4588297 (-) True G115020

Expression Profile