RNA id: TU143220


Basic Information

Item Value
RNA id TU143220
length 472
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id AMCG00018113
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1985149 ~ 2006636 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGGACCCCCGTGTGGCCCTTTCTGACCTCTGTGCTGCAGGACGAGACTCAGTGGGAAACCCCCCACCAGTTCAACCCCGGTCACTTCCTGGACTCCGAGGGGAAGCTATTGAAGAGGGACGCCTTCATGCCATTTTCTGCAGGGCCCAGGGCTTGTCTGGGAGAGAGTCTGGCCCGGATGGAGCTGTTCCTGTTCTTCACCTCTCTGCTGCAGAGATTCACCTTCACACCCCCACCAGGCACGGCAGTGTCTGAGCTGGATCTCACCCCCGATGTGGGCTTCATCACCAACCCCATGCCCCACCAGCTGTGCGCTGTCAGCAGGGCGTAACGCTGCCCCCCCTGCGAGAGTGTGTTACTGCTCAGCCTGGTTCCAGCAGATGGGTGCAGCTCCGCTGTCGGAtgattatctttatttttttatatatatacagtgggggaaaaaagtatttgatcccctgctgattttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143216 lncRNA downstream 1000 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 106774 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 138378 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 450164 1533456 ~ 1534985 (-) True G114286
TU143095 lncRNA downstream 471507 1512993 ~ 1513642 (-) True G114273
TU143345 lncRNA upstream 382709 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 650780 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 682739 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 1010314 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 1091320 3077041 ~ 3077760 (-) True G114681
AMCG00018107 mRNA downstream 6330 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 14659 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018103 mRNA downstream 110950 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 215215 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018101 mRNA downstream 236129 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018113 mRNA upstream 575 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018111 mRNA upstream 21624 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018110 mRNA upstream 47002 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018109 mRNA upstream 81925 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018112 mRNA upstream 86832 2072553 ~ 2081057 (-) True AMCG00018112
TU142989 other downstream 1058410 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1058410 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1542725 441085 ~ 442424 (-) True G114021
TU143230 other upstream 21185 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 295979 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 623424 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2075090 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2600341 4586062 ~ 4588297 (-) True G115020

Expression Profile