RNA id: AMCG00018115


Basic Information

Item Value
RNA id AMCG00018115
length 5141
RNA type mRNA
GC content 0.60
exon number 31
gene id AMCG00018115
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2080184 ~ 2095126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGTTGGTCCAGTTGTAATTCTGACAGAGCACACATCTCAGAATGGGGTTTTAAGACAAAAGCCTCTTCACGTGGTTACACTTACATCCAGCAGCTGTTTATCAAGCAACTGCATCTCTTTCTCTAGTTTTCGCATTTTCAGCTGCCGATAAGAGATCTCCTGCTCCAGGTAGCGCTTGTAGAGAGACCGCATGTCTTCCTGGCTTTCTGCGTTTCTCTGTTCCCAGCAGGTCCGGGCTCAGCATACTCTGGGTGTGGTTCGGTCCCTTCACTAGATTCCTCCTCTGGGTCCACAACGATTATTGGCGGCTGCAGCAGGGTCACTGAATGTCCGTTACTTTTGGCGTATGAGTGCCTCAGGCAGCTGGCAGGCTCTACACAGGAGCTGCCCCCAGCGATGCCCCACTTCATGGGCCTGCCCCCATCCTGCTGCAGGGCCAGCGGCTCCACGGACTTCACTTCAGGGCTCTCGGGTCTCTCTTCTTCCGTCTTCTGCTGCTTCACCCTCTTCTTCGCGCTTTGAATAATGTTCTTGTACTTCACTTTCACCTGCTGCCAAGTGCGTTTAATGCCCATTGGATTTTGACTGCATTGAGCCTATCTGCGATGTGCTGCCACGCTTCCTCTCTGCTCTTGGCCGCGGCTGCAGTGTTGCATTTCGCCGTGATGATGGATTTATACTCCTTATAACTTTCCAGGAGCAGGTCCTGCTCACTCAGACTGAAGAAAGTGGCTCTCTGTTTGGACGTCATGTCTCGCACAGACCATTGTTTCAAACCCCCGCTTGGTACGGCAGCGCCAGCACGCCCAGCCGCCCGGCGCCCCGTGTCCTAATCGCGGGGACGAGTCGAGCCTGTCCTCCGCTCGCCGCTCGGGACCTGCGATAGTCACACTTCCATCATCGGGTTAATTTAATCCGGCTAACGTCCGATTAACCTGAATTTGTTAAACCAGCTAGGAGGAAGAGGGCCCTGGCAGGACCCGCGACATCCTGTACCGTGATCCGAAGTGCCATTAATCCGCATTCACTTCAATATCGATGACACTGCGTGTGTTAGCGTGCAGATTATTATTACGATTATCCCCCGGGCGAATCGTGTGTGTTGTGCTTCtgtaggtgtttttttaattgaactactTGTAGGTCTCTGCCAGGACCCGAGCCCCGTCTGTCCGCCGCACAAAGCCGCTCAGCGCAGACGAGCCGCCGGGGCCGGACGGCAGGTGTCCCCGGGCCACCGTGTCGCACAGCGCATGCAGAAGCTTCAGTCGATCCGATTGCAAAGCGCAGACACGATGTCCGTGGCCCTGCATGTCTGAAAATGACTGTTTGCGCTCCGAGCTGAAATCCCGCTGCGGCAGACCCGGGCCGGGGCGAGATCTCGCGATAACACGCTGCAACTATGGAAACGGCAGACGCAGACAgtttaataactttaaaaccCAAAACCCGGGCCGCCGGGCAAACACACCCACAACACTGACTGCGTTTCAAATGGAGCCCAGCCAAGCAGCAGGCGCCGCGGTGCCCGTTCAGATCACCGTCCTGAGGGGCAGAAACCTGAAAGGCACCAAAGGAGAGTCCTGCCTCACCTTCATCCGGGCTGAGTTCAACGGGGTGGTCCTGGGAGACTCTCAGAAGCTGGAGGCCTCTGCAGACCAGGGTGTCGAGTACAACTTCCCCTGCAGCTTTGAGTGCGCCGAGGGCTCCAACACGCTGGACGACCTGGCACACAAGCCTGTCGTCCtgaCCCTGTATGAAACCCTGCCAAAGGAGAAGAAGCAGAAAGATGAGAAGACACTGGTCCTGGGCCAGGCCATCGTGGGCTTGCTGCCTCTACTACaggGTCAGAACACATTCAGCATCACGGCCCCCCTGCAAGCAGCTCCTGGCTCCCCAGGAGACGGTGGCGTTCTGGAGGGAAGTGATAAGCCCTCCCTGGACGTGGCCATCTGTGTCCCAGAAGCTCTTCTCTCAGAGGCTCAGCTCGCCGACTCCAATCTGCTGAAGGTGGCTGTGGAGGCGGCCTACTCCGTCCCCGAGGCCTGGGCGACGACGGGACCGCCGTTTAACTATGTGGCTGCGATGCAGGTGCCCCTGACGGCTGAGagagagcagcTGCTCGCGTTCTCTGGTGGAGCCTTGAAGCCGGGCGGGGAGAGGGAGCCGGTGCCTCGGCCGAAGAAGTGGCCCGTGGGACCCTCGCTGACCCCCGGAGCCCAGTACATCCCAGGGGCATTAATAGAGGGCCAGCCCATTGAGGGGGAGAACGGGGAGCTGACTGGTTTGGAGgacAGGGACTTCCGTGTGGAAGCAGAGAGCATCCAGAAGCGGGTGATCTGGGACACAGAGAGATGCTGCTTCCTGGAGGGAGGAGCCCTGGGCCGCCTGGCGAAGCGCATCGCGGACTGCCGGTTCTGGCCGGTGGAGATTATGAGGGCGCAGGTGAACACCGGCAAGGCGGTCAAGGCTGGCAAGGACAGGGGGGGCGAGGATGACGCGCAGCTCTCGTTCCACGGGGTGGCCTACGTGGACATGGCCCCGCTGCTGTACCCGGGCGTGAAGCGCATCAGAGGGGCCTATCAGATCCTGCCCTTCTACGAAGCAGACCTGCTGGCCAAGACGAAGCGGCAGGGCAGTGTGCTGAGGGACAGCCTGCGCCAGACAGGGGCCTCTGGGAAGGTGAGAGTGCCCTCTTCACTGGGCTCGCCCCACTTAAAGGGGGCTCCCAGCAAAATCCTCAAAGACGACAAGGGCGCCAAAGAGGCTTCTAAGAAGGCGTCTGCAGAGCGTGTGGCACAGAAGCCGCAGGTGTCGGACAGCGTAGCGGAGGTGGATGTCGGAGTGCCGCTGAACACAGAAGGACAGATGTACGCCGAGGCCAGAACCTACATTGTGATCGAGATCGCCCTGGACAGGCCCCTGGTGCCCAAGAGACTGCCAGAGGAGCTGGCCAAAAGGGTTGCAGAGTTGATTCCTCCCAGGCCCCCTCTACCGCGCCGCCCTGCTGGGGCAGAGAGGGCTGTGCGTGACTTCCATGGGCAGGTGGCCAATGTGACTGGGCTGCTGCTGGACCAGTACCATGAGCTGTTCGGAGCCGCCACGGCCCGTGGGGAGCTGCCCCTGGACGTCTGTGCCCAGGAGGAGCGCAAGACCAGGCTGCTGGGGGAGCTCAACTACTCTGGGAAGTACTTTGCTTTCAAGGAGCAGATGAAGCACTCGGTGGTGCGCATTGTGAGGGAGAAGATGCTGCGCACCGAGGCCTTCGCTGAGCCGGAGGAGCTGCAGGCTTTCCTGAGCCAGCTCTACATCTTCTTAGTGGACGAGATGCACGTCTCCCTCAACAAGagCCAGTCCAAGGATGTGCAGGACACAGAACCCCAGCCCTACCTGGACTCCGCCCAGCTGCGACACTTTGCCAGGGAGGCCCAGGTGAATGAAGACTTCCAGCTGGCAGCGCAGTACTACCAGGAGAGGCTGGCGCAGGACCGCAGCGCCCCAGCTCACTGGTTTGACTATGGCACGTTCTGCATGCTCACCGGGGAACACGCCAAGGCCGAGGAGTGCTTCCACCAGGCTGTGGCCATCGACCAGAGACACCTGTCGAGCCTCCTGCTGTGTGGCATCTTGGCGGAGATGGGAACACGGTTCGGGGACGCGGAGACCTTTTTTGAGGATGCCACCTGCGTGGACCCGTCCAGCGTAGTGGCCTGGACTCTGTTCGGGCTGTTTTACGAGGGGCAGGAGAATGCCATCCAGGCAGAGATGGCCTTCCTGGAGGCCAATAAGCAGCTGAAGGTGCGATTCCAGGGGCCGGTGACAAGCGTGCCCCAGATGGGGGACAGGCGGGGCTCTGAGCCGCAGGAGGGGGCAGCAGCGGGGGAGGCCCAGGAGCCAGCAGGGAGCTCATTGAgcacagagagacaccagaGCACAGAGGCGGAAGGGGACGAGGAGAGCGTGGCCAGCGTCTCTGACAGAGCGGGAGCTGCCACTGCAGGGGGGGGTGCTGAACCCGAGCCCGAGCCACCTGCCGCCCTCAAGCCCCTGCAGAGCAGACCCGGCCCCCCAGCCACCATCTACATGGAGACAGCGCACTTCCTCCTGGAGAACAACGCGCTGCAGATGGCCCAGCGCGCTCTGGCTCAGGAGTTGCTGTGTCCAGACGGAGGCCCCAGCAGCTGCTATCACCTCGCCCTGGCCCGGCTGCACCTGCAGAGAGCCGAGTACGACCAGGCTGAGGGCAGCCTGAAGACGGCGCTACAGGACAGCTTTGAGAACCCCGACGCGTGGGCGCTGTCTGGACACGTGCACTACCTGACCGGGGGCTTGGATGCAGCCCGGCAGTGCTACGAGAGAACGCTGGACTTCACGAAGGACGCTTCCGAGATGCACCCGGTTTACCTGAGGCTGGGCAACATCTACCTGCAGGAGCAGCAGtttgggaaagCCAAGCTCACCTACCTGAGGGCCTGCAAGAAGTCCCCCTCCTGCCTGTCCTGGCTGGGCCTCGGTACCGCCTGCTACCGGCTTGGGGAGCTCACAGAGGCCGAGGACGCTCTGACAGAAGCCAACACCTTGAACAACGCCAACCCTGAGGTGTGGGGATACCTGTCCCTCATCTGTCTGCAGaccGGCAGACGTCTGGAAGCAGAGCAGGCTTATAAATACGCTGTAAAGGTTGGTCCTCCGCCAATTGCAAGCAGTGCTGCGCCGTTAAACCTCCAGAAGGGCACCCTCCTCCAGGAAATTCACCAGCTGCAGCAGCGCGTCGGCTTCGGAAACCCATCCTTCTGAACAGGTACAGGCCCGGCCACGGCGCACCAAAGACCCGCAGAAACTGTGGCTCGAGCTGTTTTACACCACCACGGACAGAGCTCATCAATGTGGCCCTAAAACGATGAGGATTAGACGCCATCACATGAGAAAGAAGCTGTTCTGAGCTGTGTGTAAATGAAGCGGACGGCTTTGTGCAATTTGTTGTATTAGCACATTTTCCCAAGTCATAAATCTACAGTTCACCCCAAGGTAAATCTGCACCCCTGTAGTCTGTTGGTTGCTCTCATTACAGCCTCGATGCAGTTGTCTCCTAATAAAAACAGCGTCTATTCAATAAAATCTATTGTCTTGGCACAGTTG

Function

GO: NA

KEGG:

id description
K24932 CFAP70, TTC18; cilia- and flagella-associated protein 70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143212 lncRNA upstream 30007 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 58554 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 96034 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 106501 1972926 ~ 1973683 (+) False AMCG00018105
TU143164 lncRNA upstream 109775 1969780 ~ 1970409 (+) True G114326
TU143296 lncRNA downstream 167550 2262676 ~ 2266751 (+) False AMCG00018119
TU143377 lncRNA downstream 315351 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 321681 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 396187 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 478511 2573637 ~ 2573867 (+) True G114531
AMCG00018106 mRNA upstream 97618 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018105 mRNA upstream 106260 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018102 mRNA upstream 233274 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018104 mRNA upstream 277956 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018096 mRNA upstream 300525 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018114 mRNA downstream 429 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018116 mRNA downstream 21489 2116615 ~ 2118790 (+) True AMCG00018116
AMCG00018121 mRNA downstream 105309 2200435 ~ 2203330 (+) True AMCG00018121
AMCG00018120 mRNA downstream 116383 2211509 ~ 2212924 (+) True AMCG00018120
AMCG00018119 mRNA downstream 152727 2247853 ~ 2266775 (+) True AMCG00018119
TU143173 other upstream 99805 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 99805 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 99805 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 99805 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 101457 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 470958 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 545720 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 2096591 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2506364 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2666392 4761518 ~ 4763905 (+) True G115049

Expression Profile