Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009377 |
| length | 1771 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 4 |
| gene id | XLOC_004734 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 25432626 ~ 25487244 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | biological_process |
| GO:0030512 | negative regulation of transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0043124 | negative regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0051645 | Golgi localization | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0030145 | manganese ion binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0017076 | purine nucleotide binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0035639 | purine ribonucleoside triphosphate binding | molecular_function |
| GO:0043169 | cation binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004722 | protein serine/threonine phosphatase activity | molecular_function |
| GO:0032553 | ribonucleotide binding | molecular_function |
| GO:0032555 | purine ribonucleotide binding | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041114-185 | Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Acts upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B). |
| ensembl_id | ENSDART00000153333 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010938 | lncRNA | upstream | 2255 | 25380089 ~ 25430371 (+) | False | XLOC_004733 |
| TCONS_00009376 | lncRNA | upstream | 11905 | 25312018 ~ 25420721 (+) | False | XLOC_004733 |
| TCONS_00010939 | lncRNA | upstream | 24106 | 25380168 ~ 25408520 (+) | False | XLOC_004733 |
| TCONS_00010741 | lncRNA | upstream | 43035 | 25382277 ~ 25389591 (+) | True | XLOC_004733 |
| TCONS_00010740 | lncRNA | upstream | 44956 | 25380137 ~ 25387670 (+) | False | XLOC_004733 |
| TCONS_00010742 | lncRNA | downstream | 29200 | 25502406 ~ 25504380 (+) | True | XLOC_004735 |
| TCONS_00010940 | lncRNA | downstream | 1016147 | 26489353 ~ 26491973 (+) | True | XLOC_004744 |
| TCONS_00010942 | lncRNA | downstream | 1116438 | 26589644 ~ 26593298 (+) | False | XLOC_004748 |
| TCONS_00010941 | lncRNA | downstream | 1116438 | 26589644 ~ 26593298 (+) | True | XLOC_004748 |
| TCONS_00010943 | lncRNA | downstream | 1164921 | 26638127 ~ 26725781 (+) | False | XLOC_004750 |
| TCONS_00009375 | mRNA | upstream | 148116 | 25223873 ~ 25284510 (+) | True | XLOC_004732 |
| TCONS_00009374 | mRNA | upstream | 165495 | 25223873 ~ 25267131 (+) | False | XLOC_004732 |
| TCONS_00009373 | mRNA | upstream | 165497 | 25223843 ~ 25267129 (+) | False | XLOC_004732 |
| TCONS_00009370 | mRNA | upstream | 321652 | 25097754 ~ 25110974 (+) | True | XLOC_004730 |
| TCONS_00009369 | mRNA | upstream | 340056 | 25085751 ~ 25092570 (+) | True | XLOC_004729 |
| TCONS_00009381 | mRNA | downstream | 127479 | 25600685 ~ 25603341 (+) | True | XLOC_004736 |
| TCONS_00009382 | mRNA | downstream | 167274 | 25640480 ~ 25770232 (+) | True | XLOC_004737 |
| TCONS_00009384 | mRNA | downstream | 302528 | 25775734 ~ 25830268 (+) | False | XLOC_004739 |
| TCONS_00009385 | mRNA | downstream | 302608 | 25775814 ~ 25829018 (+) | True | XLOC_004739 |
| TCONS_00009386 | mRNA | downstream | 372288 | 25845494 ~ 25881944 (+) | True | XLOC_004740 |
| TCONS_00009372 | other | upstream | 180839 | 25223799 ~ 25251787 (+) | False | XLOC_004732 |
| TCONS_00009364 | other | upstream | 867034 | 24565478 ~ 24565592 (+) | True | XLOC_004724 |
| TCONS_00009361 | other | upstream | 1014286 | 24418224 ~ 24418340 (+) | True | XLOC_004723 |
| TCONS_00009355 | other | upstream | 1087133 | 24342331 ~ 24345493 (+) | False | XLOC_004722 |
| TCONS_00009353 | other | upstream | 1218109 | 24214401 ~ 24214517 (+) | True | XLOC_004721 |
| TCONS_00009383 | other | downstream | 174921 | 25648127 ~ 25648243 (+) | True | XLOC_004738 |
| TCONS_00009419 | other | downstream | 1661663 | 27134869 ~ 27134967 (+) | True | XLOC_004762 |
| TCONS_00009421 | other | downstream | 1683737 | 27156943 ~ 27163064 (+) | False | XLOC_004764 |
| TCONS_00009426 | other | downstream | 1745787 | 27218993 ~ 27220589 (+) | True | XLOC_004765 |
| TCONS_00009428 | other | downstream | 1758089 | 27231295 ~ 27234421 (+) | False | XLOC_004766 |
