RNA id: AMCG00018116



Basic Information


Item Value
RNA id AMCG00018116
length 945
RNA type mRNA
GC content 0.65
exon number 6
gene id AMCG00018116
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2116615 ~ 2118790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACGGCGGAGGAGAGCGCCTGCGGGTCACACGGAGTCAAAGGTTCGCCTGCAGGTCATGTTAATCCGCGTCAGCGACCACGTGTCGTGCTGGCAGAGCGCCGGGCTCCTGTCTGCGGGTCTTCTGCATGCGTTGGCCGGTGCAATGGAGAAACACGGGTTGTCTGCTGCTCCAAACTACATGCTCAAGGCTGGATCGGTGATATCCGCGCCGTATCCCTCACCTCCATAGGGAACCACATTAAGTCCAGCTGCAGCCTTGTGGCCTTCAACACGGAGCAGGCGGGGACTCTGGGCCTGGCATCCCTGCAGCCCGGGCAGGACGGAAAGTGGGCGGTCTCTCAGCTCCCCTGTCATGCCGACCTGGTGACGGATTTTGACTTCTCCCCGTTTGATGATGCGCTGCTCGCCACCTGCTCGGCCGACGAGACGGAGTGCGGTGCCCAGAGCCGGTGGGCCAGACAGCCGCGGTGCTTTGATGGCTGCTCGAATGAAGCCGTTATTGCCCGAGTTACCCAAGGAGCCCGTGCCGTGCCGTGGTGTTGTTTTGACCGGCTGCCCTCTGTCCCCTCTGGCCCCCAGGTGAAGGTGTGGCGTGTCCGGGAGCCGGGGCAGGACGCTCCCTCTGCGGCGGACGTGACGCTGTGTCCCGGGCAGGGCCGTGTGGAGGCCGTGCTCTTCCACCCCTGTGCTGACGGGGTTCTGGCCATTGGGACCGTCAGGACCGCCACCGTGTGGGACACCTCTCGCCAGGAACCCCTCGCAGTCCTCGAGCAGCACGGAGACCAGCTGCACAGCCTGACCTGGAAGCTGGACGGCTCCCTGCTGGCCACGTCGTGCAAGGTAAGAGCGACCCGGGCCAGGAGAGCTGCTCTGGGTAGCGCTGCCAGTCACCCTGTGGCTGTTAGGCCCGGCCTGGTCCGGCCCGCCGCTGTTCTCCTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143212 lncRNA upstream 66438 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 94985 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 132465 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 142932 1972926 ~ 1973683 (+) False AMCG00018105
TU143164 lncRNA upstream 146206 1969780 ~ 1970409 (+) True G114326
TU143296 lncRNA downstream 143886 2262676 ~ 2266751 (+) False AMCG00018119
TU143377 lncRNA downstream 291687 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 298017 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 372523 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 454847 2573637 ~ 2573867 (+) True G114531
AMCG00018114 mRNA upstream 11833 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018115 mRNA upstream 21489 2080184 ~ 2095126 (+) True AMCG00018115
AMCG00018106 mRNA upstream 134049 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018105 mRNA upstream 142691 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018102 mRNA upstream 269705 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018121 mRNA downstream 81645 2200435 ~ 2203330 (+) True AMCG00018121
AMCG00018120 mRNA downstream 92719 2211509 ~ 2212924 (+) True AMCG00018120
AMCG00018119 mRNA downstream 129063 2247853 ~ 2266775 (+) True AMCG00018119
AMCG00018124 mRNA downstream 162907 2281697 ~ 2291760 (+) True AMCG00018124
AMCG00018125 mRNA downstream 184174 2302964 ~ 2305444 (+) True AMCG00018125
TU143173 other upstream 136236 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 136236 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 136236 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 136236 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 137888 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 447294 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 522056 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 2072927 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2482700 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2642728 4761518 ~ 4763905 (+) True G115049

Expression Profile