RNA id: AMCG00018117


Basic Information

Item Value
RNA id AMCG00018117
length 1983
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00018117
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2160400 ~ 2162382 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTCTTCCcactcctgctcctgctccccGTGGCCCTTGTGCACTCCTGTCCCGACGGCTGCACGTGCCTCTATGGGGAAAACATCTTCTGCACCCAGCGGAGGGCGAGCTCCATGCCCCGGAACGTCCCCGAAAGCACGCAGAATCTCTACCTGTTCCAGAACGGCATCACCTCTCTGCGCACAGACGATTTCTCCACCCTGGCCGGCCTGGTACTCCTGGACCTCTCGCAGAACCGCATCTCCGAGCTCCCCGGCCAGGTGTTCGAGCCCCTCGCTTCCCTGTGCAACCTGGACCTGTCGGCCAACCAGATCACCGAGATCTCCAAGGGGACCTTCGCTGGCCTGCACATGCTGGAGCGCCTCTATCTGCACGGCAACCGCATCCAGAACATCCACACGGCCGCCTTCGATGGCCTGGACAGGTTGCTGGAGCTGAAGCTGCAGGAGAATCAGATCACGGTGCTGCCTGCCCTCCGCATGCCCAGCCTCCTGCTCCTTGACATCAGCTTCAACAAGATCCCCTCGCCACGCCCTGAGAACCTAGAGCTGGACAACCTGGAGTCCCTGAAGATGTCGGGGTTGGGCCTCAGCTATCTGGATGAGAACCTGATGAAGAACCTGGGGAACCTTCACGACCTGGACCTCTCCAAGAACCAGCTGAAGGCCGTCCCTGCAGCCCTCAAGCAATGCAGAGGGCTGATCACTCTGAATCTGGCGGGCAACCCTCAGGTGGCCCAGCTGAAGAAGGAGGACTTCCAGAACTTGGAGAACCTGCAAGAGCTGAACCTCAGCAACCTCAACCTTCAGGGCATCCCCGAGGGTTTGCTCCAGCTCTTCCCCCGGTTGCAGACCCTCTCGGTGGCTGAAAACCCCTTCAACTGTGTGTGCCCCCTGGCCTGGTTCCCCCTGTGGGTGCGTAGCAGCCAGGTGGAGCTTGCCCGGATCGAGGAGACGCGCTGCCATTTCCCCCCGCTCAATGCCGGGAAGGTCCTCAAaaggctggagcacaaggacttTGGATGCCCCACCACCACGACCACGACCACCACCACAGTGAAGACGAGCCGCCCCGAGCCTCCTGTCGTCACCACCCTGCCTACGACAACGCTGCCCACCCCATCGCCCAGCCAAAGCTCGATGGACAATGCCGGCAGCACTCCTCCCCCCGACACGCCCGAGCTCAGCAGCAAACCGGACCCCAAGGTGCGCTTCTGCCCACCCAACATCTGTCTGAATGGGGGCACCTGTCAGCTGGACCACAAGGGCCACGTGGAGTGCACCTGCCCCCCCAGCACCAGGGGAACCTACTGCGAGAGCAAGGAGGACACGACGCTGGGCATCTCCACTCCGGCTCTCACCACCGAGCCCGCCATCCGCTCCAGAAAGGCCACCAGCACCTCCATCCTGGTGGACCTGCACCGCTACATCCAGGCCCGGCCGCAGCTCCGAGGAATCCGGCTCACCTACAGGAACCTGTCGGGTCCAGACCGACGGCCCATGCAGCTCAGCGTTCCCGCCTCCTACCCGGAGTACACGCTGCGGGGGCTCCGGCCCAACTGCACCTACCACATCTGCGCCAGCCCCCTGGGGGAGCCGGAGACAGAGGACAGCTTCTGCACTGAGGCCCAGACCTCCAGCCAGCAGCTGCACCACTCCCCCATTACGCAGTCCCAACACGGGCAGCTCACCACCATGGTGGTCCCCTTGGTGTCTGTGGTCTTGGTGGTAGTGGTGGCTGTGGCCGGGGGCATCTACTATGTACGCAGGAAACGGGCGAAAGGCCACCCAGACCTTGGCGCTGACCCCTGCCCCCTGGAGCTGGAGGGGGTCAAGGCTTGCCTGGAGAACGGGACGCTGCCACAAAAGGTGCCCGACGTCTCACAGTCCCCGAATGGGCTGGAGTACGAGGTCCCACTGATGCAAGGGCACGGGCCGGCCAACAACAACGTGGCGGCCCTGAAGCCCTCGTACTTCTGA

Function

GO: NA

KEGG:

id description
K24500 VASN; vasorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 174679 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 176251 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 282025 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 313629 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 625415 1533456 ~ 1534985 (-) True G114286
TU143345 lncRNA upstream 206048 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 474119 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 506078 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 833653 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 914659 3077041 ~ 3077760 (-) True G114681
AMCG00018118 mRNA downstream 49733 2105605 ~ 2110667 (-) True AMCG00018118
AMCG00018112 mRNA downstream 79343 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018109 mRNA downstream 92374 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018110 mRNA downstream 113408 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018111 mRNA downstream 131423 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018123 mRNA upstream 40995 2203377 ~ 2209563 (-) True AMCG00018123
AMCG00018122 mRNA upstream 52490 2214872 ~ 2220701 (-) True AMCG00018122
AMCG00018137 mRNA upstream 239916 2402298 ~ 2408795 (-) True AMCG00018137
AMCG00018135 mRNA upstream 248636 2411018 ~ 2420035 (-) True AMCG00018135
AMCG00018134 mRNA upstream 281325 2443707 ~ 2449697 (-) True AMCG00018134
TU143230 other downstream 92816 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 153764 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1233661 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1233661 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1717976 441085 ~ 442424 (-) True G114021
TU143313 other upstream 119318 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 446763 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1898429 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2423680 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2484195 4646577 ~ 4651612 (-) False AMCG00018220

Expression Profile