RNA id: AMCG00018125


Basic Information

Item Value
RNA id AMCG00018125
length 2133
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00018125
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2302964 ~ 2305444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCACCGCAGCGACAGAAGCTGCTTTTGCACCACACGGAGGTGATTTGCGATTCTGGTGGAGACGGAGTGTCAGTGAAAATTAACAGCAAGCCGAAGATGCATGGCCCAgcgagcagcagcagcagcgccggCGGCGGCTCCAAGCACTGCAAATACAGCATCTCCTCCAGCTGCAGCTCCGGGGAGTCGGGGGTGCGCAGGACTGCCGTGTCTGGGCTCAGGAACCAGAGGAAGGTCCCCCAGCTGTTCGAGAGGTCTGCCGCTCAGTGGTGGGACCCCGGCTTCGACTCCCCCATCCTGGAGGAGGCCTGCCGGGAGCGGTGCTTCCCCCAGGCGCAGCGCCGGTTCCGCTACGTGCTCTTCTACCTGCTCGCCGCCGGGCTGCTCTGGGGCGTCTACTTTGGGGTGAACCACGGCCGCTGCGCCCCCCTCGCCTTCCTGGTCCCCACCGCGGGCTTCCTGGTGTTCTGCTCCCTGCTGTTCCTGTTCACCTTCACTCGCTTCTACGCCCGGCTCCACACCCAGGTGTCGTTGCTCCTCATCCTGGTCACTTTCGCCCTGACCTTGGCCCCCCAGATCCAGACCGCCGCATTCTCCGACCTGGGCATCGAGGACGTGGACAATGGCTTGGGCAACAGCTCCATCGCCAGCTCCGGCTCCGGGTCCCTTACCCCCTGCATCTCTCCCGTGGGAACCTTCTCACTGTGCATGGaggtcctgctgctgctgtacagCGTCCTGCACCTGCGGCTGTACGCGTCCGTGCTGCTGGGCCTGGTGTACTCCATCCTGTTCGAGACTCTGGGCTGTGTCGCTTTGGCCCACGACGGCCAGGCCTCCGACACCCTGTACTGGTTGGCGCCCGGCAAGGCCCTGCTGCACCTGTGTGCCCACGCCATCGGCATCCACCTGTTCATCATGTCGGAGGTGCGCTCCCGCAGCACGTTCCTCAAGGTGGGCCAGGCCATCATGCACGGGAAGGACTTGGAGGTGGAGAAGGCCCTGAAGGAGCGCATGATCCACTCGGTGATGCCCCGGCGCGTGGCGGACGAGCTGATGAAGCAGGGTGACGATGAGAGTGAGAACTCCGTCAAGCGCTACTCCACTTCCTCCAGCCccaagaacaagaagaagaagacctCCATCCCGCGGGGCCAGATCATCTTCCGGCCGTTCAACATGAAGCGCATGGAGCCCGTCAGCATCCTGTTTGCCGACATCGTGGGCTTCACCAAGATGAGCGCCAACAAGTCCGCCCACGCCCTGGTGGGCCTCCTCAACGACCTATTTGGCCGCTTCGACCGGCTCTGCGAGATCACAGAGTGTGAGAAGATCAGCACGCTGGGCGACTGCTACTACTGCGTGGCCGGCTGCCCCGAGCCCCGCGATGACCACGCCTACTGCTGCATCGAGATGGGCCTGGGCATGATCGCGGCCATCGAGCAGTTCTGCCAGGAGAAGAAGGAGATGGTGAACATGCGCGTGGGCGTGCACACGGGCACCGTCCTCTGCGGCATCCTAGGAATGAAGCGCTTCAAGTTCGACGTCTGGTCCAACGACGTGAACCTGGCCAACCTCATGGAGCAGCTGGGGGTGGCGGGCAAGGTGCACATCTCTGAGGTCACCGCCAACTTCCTGGACGACCGCTACGAGCGCGAGGATGGCCGGGTGATGGAGCGCGTGGGGCAGAGTGTGGTGGCGGACCAGCTGAAAGGTACAGTGGGGCAGATGGGGGTGGGTCGTCAGGCTGTACTATACACTCCAAGTATACTGCAGGCGGGTGTTGATTTGAACCAGGCCTGCCTGTTAGTGTGGCGCCTGAATCCCATCACAGCTACAATGCGTAAGATGGAGGCGCCACTTCATTTGCAGTCCCGTCCGTCTCGCCCAACGTTTCGCTTCCTCTCACAATGGTTCCCGCGGGCGGCCTCGGTGCCCGGTGTCGGTCCCGGAGATGCTGGGCCTCGGAGACGCCCTGTATTTGTGGTAACGTCGTCTAGGGTGGCATCGTCCGGCTCATGCGTGTCGCCCCGGGGGAGAGACAGGGCCCAGGCTGCGTCAGTTTCCGACTCTGAGGCATTAGGTAAACGCTCACGGATTGCCGCACAGGCCTTGCCGTGGTATTGA

Function

GO: NA

KEGG:

id description
K08049 ADCY9; adenylate cyclase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143296 lncRNA upstream 36213 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 252787 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 281334 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 318814 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 329281 1972926 ~ 1973683 (+) False AMCG00018105
TU143377 lncRNA downstream 105033 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 111363 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 185869 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 268193 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 303699 2609143 ~ 2609412 (+) True G114548
AMCG00018124 mRNA upstream 11204 2281697 ~ 2291760 (+) True AMCG00018124
AMCG00018119 mRNA upstream 36189 2247853 ~ 2266775 (+) True AMCG00018119
AMCG00018120 mRNA upstream 90040 2211509 ~ 2212924 (+) True AMCG00018120
AMCG00018121 mRNA upstream 99634 2200435 ~ 2203330 (+) True AMCG00018121
AMCG00018116 mRNA upstream 184174 2116615 ~ 2118790 (+) True AMCG00018116
AMCG00018127 mRNA downstream 23260 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018126 mRNA downstream 50833 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018129 mRNA downstream 79856 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018128 mRNA downstream 87861 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018131 mRNA downstream 115821 2421265 ~ 2432982 (+) True AMCG00018131
TU143173 other upstream 322585 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 322585 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 322585 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 322585 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 324237 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 260640 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 335402 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1886273 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2296046 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2456074 4761518 ~ 4763905 (+) True G115049

Expression Profile