RNA id: AMCG00018126


Basic Information

Item Value
RNA id AMCG00018126
length 6975
RNA type mRNA
GC content 0.65
exon number 30
gene id AMCG00018126
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2356277 ~ 2382087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGATAGACTTGGGATCCCTGTTCGACCTGGAGAACGACCTTCCTGATGAGCTGATTCCCAACGGCGGAGACCTGAGCCTGATGGGCATGCCCTCCAACGGCAGCTCAGGGATGGGCACCATGGCGCAGGACGCCGTCGCCAAGCACAAGCAGCTGTCAGAGCTCCTGCGGCCGGGCAGCAGCTCCAGCCAGAACGCCGGGCTCAACTCTGGCAGCCCCCAGCCGGGCATGGGACCCCAGCAGGGCGGGCCTGGGGGGCTTGCGGGGCTGGGGGCCCTCACAAAAGGGATTCAGGTGTCCGGCGGCTCGGCTACCGTGCCCTCCCAGGTCCAGAAGCAGGTGGCCTCCCCCGGCAACCAGAGCAACGCGGCCATGGGCATGAACGCGGGCTTCAACCAGGCCATGATGAACAGCAACCAGGCCCACGGGCTCCTGAACCAGAACTCCCAGGCGCCGGGCCAGGTGATGAACGGCTCGCTGGGGTCTGTGGGCCGCGGGAGAGGCGTGCCCGGCTTACAGTACTCCGGCCAGGGCATGCAGGGGCCGGCGGGGGGCGGCGCGGGGCCCGGCGGAGCGGGGAGCGTGCTGGCTGAGACGCTGACGCAGGGAGCGCCGCAGCTGGGGGGTCTGCCGGCCATGAACGCACAGCAGGCCGGCGGCATGAATAAGATGGGGCTGGCCGGCAGCGGTGGCCCTTTTGGGCAGCTGTACGGGCAGAACGCAGGGCAGCAGCTGGGGGCCACAGGGGTCAACCCCCAGTTACAGAACAAAGCGGCGCTGTCCAATAGCCTGCCCCCCTTCCCCACGGACCTGAAGGGCTCTGCCGTGTCCAGTGTGCCAAACCTGACTCAGATgcagcagcagccccagcaGGTGGGCATGGTCCCCAACCAGGGGGTCTCCACGGGCCCCACGGCTGACCCCGAGAAGCGCAAGCTGATCCAGCAGCAGCTGGTCCTCCTGCTCCACGCCCACAAGTGTCAGCGGCGGGAGCAGGCCAACGGGGAGGTGCGCCAGTGCGCCCTGCCCCACTGCCGCACCATGAAGAACGTCCTCAATCACATGACGCACTGCCAGGCCGGCAAGTCCTGCCAGGTGGCTCATTGCGCATCGTCTCGACAGATCATCTCGCACTGGAAGAACTGCACTCGGCACGACTGCCCCGTCTGTCTGCCCCTGAAAAACGCCAGTGACAAGAGAAACCAGCAGCCCATATTGAACTCCCCCAGCGCCGGTTTACAGAACTCAATCGGCACGGGGGTGACGGGCCAGCAGAGCACGTCCACCATCAACAGCGCCACCACCATCGACCCCAGCTCCATGCAGAGGGCCTACGCTGCCCTGGGCCTGCCCTACGGGAACCAGCCCTCGGCGCAGACGCAGCCTCAGGTACCGGGCCAGCCCAACGCACAGAACCAGCCCCACCAGCAGCTGCGGTCCCTCAACGCTCTCGGCACTAACCAGATGAACCTGGGGGCAGGAGGAATGGGCGTCACTGACCAGGCCAACCTGCTCCAGGACTCCTCCCTGCCTTCCTCGCTCAGTTCCTCAAATCAGCTGATGCCCGATGGCACGGCCGTGGGCAGTGTGGGAAACGTGGGCAACCTGCCCACTGCGGCGCCCCTCTCCGCCAGCGGGGTGCGGAAGGCCTGGCACGAACACGTCACCCAGGACCTGCGCAACCACTTGGTGCACAAACTGGTTCAAGCCATATTCCCCACCCCGGACCCCGCCGCCCTGAAGGACCGCCGCATGGAGAACCTGGTGGCTTATGCACGCAAGGTGGAGGGAGACATGTACGAGTCTGCCAACAGCAGGGACGAGTATTACCATTTCCTGGCAGAGAAGATCTACAAGATCcagaaggagctggaggagaagaGACGGTCACGCCTGCAGAAGCACAGCATTAACCAGACCCCCATGGCTGCCCAGGGGAACCAGCAGGCTGGACTGCCGCAGCCCTCCGCCCTGGGCCCGGCTCAGGCCGTCAGACCCCCCAATGGACCTATGCCTATTTCCAATGTGCCAAATCAACATATGAATCGCATGCAAGTTTCTCAAGGAATGAATCAGTTTAACCCCATGACAATGAACAATGTATCGATGACACAGACACCTATGGGACCCCGGGCCGCCTCCCCGATGAACCATCCTGTACAGATAAACATGGGCTCAGTTTCTACGATGGCAATGTCCCCTACCAGAATGCCACAAGCACAGGGCATCATGGGACCCCACGCTAACAACATGGTCGGCCAGACTGCAAATCAAAACCAGTTCCTGACCCAGAACCAGTTTCCTCCTTCCAGCGGGGCGATGAATGTGAATGTGGGCCTGGGGCAGCAGGCGGCCCAGGCCGCCGTGTCGCAGCAGGCCCAGAACCCGAATCTCCCCATGAACCAGATGGGCCCCCTCGGCACGCCGCTGCCCTGCACCCCCGTGGCCCAGCCGTCGCACCACCAGGCCCAGCCGCCCGCCTCCTCGGCCACCGCCAGCATGCAACCGATGCAGCACCCGGCGTCCCAGGGCCTGACGCCGCCGCAGGCCCAGCCCTCCACCCCGGCCTCCTCGGGAGGGCAGGCGTCCACGCCCAGCGTCCTGCCCAGTGCGGCCCCCGCCCAGGGCACCCCTCCAGGCCCGCCCCCCGGCCAGGCGCCCGGCCAGCCCCACACGCCTCTCCAGCTGCCAGCCGAGCCCACGCCGCAGCCCCAGCAGCCCAGCTCTGTGCAGGCACAGCCGCCCACCACTCCGCTGTCTCAGGCTGCGGCCAGCATCGACAATCCCGTCCCCACCCCTGCCTCGGTGGCCAGCGCAGAGGTGCACTCCCAGCAGCCCGTGCCTGACCTCCCAGCGCCTGAACCCAAGCTGgaggtgaaggaggaggagcaggactTCGAGCCCAGCGAGCAGCAGACCGACACCAAACAGGAGGTGAAGGAGGACCCCGAAGGGGCGGAGCCAAAGCAGGAGCCGATGGAAGTGGAGGAAAAGAAACCCGACGTGAAGGTGGAGCCGAAGGAGGAAGACGAGGGCGGGGCCAATGGCACAGCTCAGTCCACGTCGCCCTCTCAGTCCCGCCGGAAAATTTTCAAGCCTGAGGAGCTCCGCCAGGCCCTGATGCCCACGCTGGAGGCCTTATATCGGCAAGACCCAGAGTCCCTGCCCTTCAGGCAACCGGTGGACCCCCAGCTCCTCGGCATCCCGGATTACTTTGACATCGTGAAGAGCCCCATCGACCTGTCCACCATCAAGAGGAAGCTGGACACTGGGCAGTACCAAGAGCCCTGGCAGTACGTGGACGACGTCTGGCTGATGTTCAACAATGCCTGGCTGTACAACCGCAAGACCTCCCGCGTCTACAAGTACTGCACCAAGCTGGCCGAGGTGTTCGAGCAGGAGATCGACCCGGTCATGCAGGGCCTGGGCTACTGCTGTGGCCGCAAGTACGAATTCTCACCCCAGACGCTGTGCTGCTACGGGAAGCAGCTGTGCACCATACCCCGCGACGCCACCTACTACAGCTACCAGAACAGGTATCACTTCTGCGAGAAGTGTTTCAACGAAATCCAGGGCGAGAGTGTCACCCTGGGAGACGACCCCGCCCAGCCGCAGACcatGATATCGAAAGACCAGTTCGAGAAGAAGAAGAACGACACGTTGGATCCCGAGCCttttgttgaatgTAAAGACTGTGGACGCAAAATGCACCAGATCTGTGTACTACATTATGATGTCATCTGGCCCTCTGGCTTCGTCTGTGACAACTGTCTGAAGAAGACGGGTAAATCGCGAAAGGAGAACAAGTTCGCTGCTAAAAGGCTGCAGACCACCAGGCTGGGCATGTACATCGAGGACCGCGTGAACAAGTACTTGAAGAGACAGAACCACCCCGAGGCCGGCGAGGTGTTCGTGCGGGTGGTGGCCAGCTCGGACAAGACTGTGGAAGTCAAGCCCGGAATGAAATCCCGGTTTGTGGACATGGGGGAGATGGCCGAGAGCTTCCCCTACAGAACCAAAGCACTTTTTGCCTTCGAGGAGATCGACGGGGTGGACGTGTGTTTCTTCGGCATGCACGTGCAGGAGTACGGGTCCGAGTGCACCTTCCCCAACACCAGGCGCGTGTACATATCTTACCTCGACAGTATTCATTTCTTCAAACCGCGGAGTCTGCGGACGGCCGTCTATCATGAGATCTTGATCGGGTATCTGGAGTATGTCAAGAAACTCGGGTACGTGACTGGTCATATCTGGGCCTGCCCCCCCAGCGAAGGGGACGACTATATCTTCCACTGTCACCCTCCCGATCAGAAGATCCCCAAACCCAAGAGACTGCAGGAATGGTACCGGAAGATGCTGGACAAGGCCTTTGCCGAGAGGATCATTCATGACTACAAAGACATCTTCAAACAAGCCACGGAGGACCGGCTGACCAGCGCCAACGAGCTGCCCTACTTCGAGGGCGACTTCTGGCCTAACGTGCTGGAGGAGAGCAtcaaggagctggagcaggaggaggaggagcgcaAGAAAGAGGAGAACACGGCCTCTTGCGAGACCCCTGAGGGGAACCAGAGCGACAGCAAAAACGccaagaagaagaacaacaagaagACCAACAAGAATAAGAGCAGCGTGAGTCGGGCCAACAAGAAGAAGCCCGGGATGCCCAACGTGTCCAATGACCTGTCCCAGAAGCTGTACGCCACCATGGAGAAGCACAAAGAGGACTACGACCTATGTGTCAACTGCTACAACACTAAGGGCCACGAGCACACCATGGTCAAGTGGGGCCTGGGGCTGGATGACGAGAGCAATGGCCAGGGTGGTGAGGCGTCCAAGAGCCCGCAGGAGAGCCGGCGCCTGAGCATCCAGCGTTGCATCCAGTCCCTGGTGCACGCCTGCCAGTGCCGCAACGCCAACTGCTCGCTGCCGTCCTGCCAGAAGATGAAGCGCGTGGTGCAGCACACCAAGGGCTGCAAGCGCAAGACCAACGGCGGCTGCCCGGTGTGCAAGCAGCTGATTGCGCTGTGCTGTTACCACGCCAAGCACTGCCAGGAGAACAAGTGCCCCGTGCCCTTCTGCCTCAACATCAAGCACAAGCTCcggcagcagcagctgcagcaccgGCTCCAGCAGGCCCAGATGATGCGCCGCCGCATGGCCACCATGCAGGGCCGGGCGATGCCCCCCAGCCTGCCGTCCCCGCCTACCTCAGCCACACCGGGCACCCCCACGGGCCACCAGCAGCCCGGCACCCCCCAGACGCCCCAGCCCGCCTCCGCACCCCCCCAGCCGCAGACGCCCAGCGCCGGCGTCATGACCCCCGCCTTCCCCACCCCTCCCCGGGGCGGCCAGCCCCCCGCCGCCGCCTCCCAGGGAAAGCCAGGCACCCAGGCCTCGCccctgcagcagcagccgcctccccagcagcagcaaccccctccacagcaacaacagcccCTACCCCcgccccagcagcagcagcccccgGCGGCCGCGGTGGAGATAGCGCGGCAGATTGAGCGTGTGGCGCAGCAGCAGGTGTTCCGGAGCAACATGAATGGCATTCCGGGGGCCCAGGCGCGCATGGTGGGGCCCCTGCAGAGCCCCATCCAGATGGGGACGTCCCGAGTGGCCCCGGTCATGCCCCCCATGCAGCCAGGACAGTGGGCCCCCCAGGCACACCCGCACTCAGCACAGCAGGTGCCCCCCCAGACGGCCATCCCTCCCCAGCAACAGCAGGTGCCCCAGCCACCCCAGCAGGCCCCTCCCATGCAGCGGCCCATGATGCCCCAGCAGCCGGGCCCCAGGATGCCCGGGGTGATGCCCCCTCAGGGCCCCTCGCAGCCCCCCCAGCAGCAGGCCCCGCCCCGAGGGCCCGGCAACGTCCACTCCACCGCGCTGCAGGACCTGCTGCGCACGCTCAAGTCCCCCAGctcgcagcagcagcagcagcaggtgctCAACATCCTCAAGTCCAACCCGCAGCTCATGGCCGCCTTCATCAAGCAACGCACGGCCCGGTACCAGGCCAGCcagccgcagcagcagcagcagcccccgcCCGTCATGCACGGGGGGCAGCCCGGCATGCAGAACCTGGCCCCCATGCAGGCGGGCGCCGTGCAGAGACCGGGCATGGCCCCCCAGCAGCCCCCGCAGGCAGCACCGCAGAGCATGAGCGCCATGGCGGGGCAGCAGCTGATGAACCCAGGGCACAACCCCAGCCTGCAGATCCGGGAGATGTACCGCAGGCAGCTGCTCgcccagcagcaccagcagcagcagcagcagcagcagcagcagcagcagcagcagggcgcGATGCCCGCGGCGCATGGCCAGTTCCCGCAGGCGCAGCCCTCGCCTGCCTCCTACTCGCAGCGCATGCAGCAGCACATGGCCATGCAGGGGGGCGGGGGCTCCATGGGGCAGCTGCCCTCCATGGCGCAGATGGGGCAGCCGGGGATGGGCCTGGATGGGGCGCAGAGCCTCCTGCACCAGCGCAtgctccagcagcagcaacagcagcaggcCGTGCTGAAGCAGCAGATGGGCTCCCCGGCCCAGCCGGGCCCCATGAGCCCCCAGCCGCACATGCTCCCCGGCCAGCCCCAGGGGCCGCACCTCCCCGGCCAGCAGATGGCCACGTCCCTCAGCAACCAGGTGCGCTCTCCGGCCCCCGTGCAGTCGCCCTGCCCCCCGTCGCAGCCGCCACATTCCAGCCCCTCGCCGCGGATACAGCCCCAGCCCTCGCCCCACCACGCCTCCCCGCAGACCGGCTCCCCCCACCCCGGCCTGGCCGCGCCCATGCCGGGCTCCATGGAGCAGGGACACCTGGGCGCGGCGGAGCAGAGCGCCATGCTGCCGCAGCTCAACACGCCGGGCCGCGGCGGCCTGCCCAGTGACTTGAGTCTGGTGGGGGACACGACGGGAGACACGCTAGAGAAGTTTGTGGAGGGATTGTAG

Function

GO: NA

KEGG:

id description
K04498 EP300, CREBBP, KAT3; E1A/CREB-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143296 lncRNA upstream 89526 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 306100 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 334647 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 372127 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 382594 1972926 ~ 1973683 (+) False AMCG00018105
TU143377 lncRNA downstream 28390 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 34720 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 109226 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 191550 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 227056 2609143 ~ 2609412 (+) True G114548
AMCG00018127 mRNA upstream 22246 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018125 mRNA upstream 50833 2302964 ~ 2305444 (+) True AMCG00018125
AMCG00018124 mRNA upstream 64517 2281697 ~ 2291760 (+) True AMCG00018124
AMCG00018119 mRNA upstream 89502 2247853 ~ 2266775 (+) True AMCG00018119
AMCG00018120 mRNA upstream 143353 2211509 ~ 2212924 (+) True AMCG00018120
AMCG00018129 mRNA downstream 3213 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018128 mRNA downstream 11218 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018131 mRNA downstream 39178 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018133 mRNA downstream 51311 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018130 mRNA downstream 52369 2434456 ~ 2443528 (+) True AMCG00018130
TU143173 other upstream 375898 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 375898 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 375898 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 375898 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 377550 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 183997 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 258759 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1809630 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2219403 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2379431 4761518 ~ 4763905 (+) True G115049

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051039 True 12266 mRNA 0.48 31 NC_007114.7 9634777 ~ 9722603 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_06658256_06687802.mRNA True 7071 mRNA 0.56 29 CI01000030 6658256 ~ 6687932 (+)