RNA id: AMCG00018128


Basic Information

Item Value
RNA id AMCG00018128
length 6279
RNA type mRNA
GC content 0.63
exon number 14
gene id AMCG00018128
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2393305 ~ 2401409 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGACTCGGACGAGGAATTCTCCGGCCTCTGTGCCAAGCTGCTGAAGCGAGTGAAGAGGAGGGCCGGGGAAGCTGAGAAGAGGAAAGATGGGCAGAGTGGcggagaggaggagagcagagccCCAGCGCCCCCCAGGGCCACCCGGGGGGGCAGGAGAGGCAGGTCCAGGAAGGGGGAGGACAGGGgtttgaggagggaggagagcgAGACGACCAGAAGGGCCGGGTTTTCCCAGGCTGGGGGTGCACTGAGGGACCCCTGTGCTCTGGAAAAAGACCCTGTCCTGCCCTGCAGTGGCCTGGCAGCGCCTCCTGCTGGCAGCACAAGGGAAGTGCCAGTGAATGGGGTCCCGAGTGTGAAGGAGAAGGTGTTGCACAGGATGCAGCAGTTTAAGAGGGTCAGTCCCGAGAGACTGACGCACACCGGGCAGCTCCAGCCAGAGAGAGGTGCCGCTCTCCCTCCAGGTCAGACGCTCAGCTCCTGGGCAGAACCGGACGCCAGCTATGGAGGGACCTTTACTCCCGCCGTGGCCCCCGGCCTGGAGGGGGACGAGGCCCTGGCCGTGCGGCTGCAGGAGGCTCTGCAGAGGGAGGCGTGGGGGGCGGTGGGGCTGGAGTGCGAGGGGCTCTTCTTCTGCCAGATGTGCCAGAAGGACCTGTCGGCCATGAACGCTGTCCGCCGCACCCAACACATCAACAGGTCTGTCCCCGCGCCGTCTGCGATCCGGCCCCCCGGCCCAGCAGGGCAGTGCGGCCCCCCCACTGTACTGAAGTGCCTGGACGAGAGCGAGGGGTCCATACCGCCGTCCGTCCACAGGGTCCCCGAGTGTCCCATCTGCGGGAAGGAGTTCAGATCCCCGCAGAGCCGGGCCGCCCACCTGAAGCGCTGCGCGGTGGCCATGGGCGTCCCCCCCCCACTGCTGCTGGAGGCCCTGCAGAGACAGGTGGCGGAGACAGACGCCGGCGCAGCCCGTCCCCGCCCCCCGCCCGGGCGCCCCAAGAGGAAGGGCTCCGCGGACCCCAGCAGAGCGGCCAAGCGGCCCAAGAGGAGAGCTGAACCCCTGGACGAGGACACCATGGTGGCCCTGGCTCTGTCGCGCTCCCTGGTGGAGGATGAGAGACCGAGGGCGGCCCAGCAGACGGTGGGACAGCCAGGGAGGGTCTGGGACGAACCGCGGAGGCCTGGAGCGAgGAAGAAGCGTCGCAGGAAGGGGGCATCCCCGGCGCCCCTGCCCCTCCTGCTGCTTCAGGACCCCCAGAACGCCCTGCTCCGGCTGCAGGAGAGAGCCTCCAGCCTGCTGCTCCGGGAGCGACCACAGCCCCCACCCACGCCCAGCCTGAGGCCCAGCGGCCTCCCCGCCACTGACACGGCACTGGGGGGTCCCAGCACCCCTCTGTGGCTGCGGAGTGCATTGTGGGACAGCTCCTGCTCCCTCCAGTCCTTCTACACCCCCCAGCTCACGCCTCCCATTGAGCCCTGGACCGCCAGCCTGGAAAGGACGTCCAGCTGTCTTCCTGCGGCTGGTGTCCCAGGGGCCCCTGCTGTGGGGCCCCAGAGAGAGGTCGCTCAGCCTAGCCTCAGCAGTGCCGGGCTGCAGACAGGGGCCCCGGAGTCCGCCAGGTCCGCCGTGAGCTGTGGGTCCCAGGGGAACCAGACGCTGCGTGACCTGATGGATCTGGCGGAGGAGGGCCTGACGCTCACGCAGTGGGGCCCCAGGCTGAGCGCCACACAGGGCCACAGCAGCAGCCCGGCCGCCCTCCCTCTCAGTGGCTTCGTCCCGACTCCAGAGAGAGCGCCCTCAGCTGGCACCTCCCAGGGCCGGGTGGCGCTGTCTCAGCTGGCCTCAGACCTGGCTGCCATGGTCAACAACCCCCAGCTGAGCGACGTGCAGTTCCAGACGGACTCCGGGGACGTGGTCTTCGCTCACTCCTTCATGCTGTACGCTCGCTGCCCCCTGCTGGTACAACTGGTCCACGATGAGGGGTTCTcggtggaggagggggggatgCCCAGCACGAGGAGGGTGCTGCTGGGCGAGGTGCCAGCAGAGGCGGTGTGTGCGCTGCTGCAGTACCTCTACACTGCGGACTGCGCCGTCACGGGCACACTGGCACCCCATGTGGGGGAGCTGGCGTCCAGGTTCGGACTGAGGCAGCTGGAGGAGCTGTGCCAGGGCGTGCAAGGAGCTGACGGGGCCCCGGCGGAGTCCTGGCAGGAAGCCCAAGAGCAGGACATGGAGGGAAAGTGTGAGGATGGGGACCACAATTTCCAGGAACTCCTGCGCTCCATGTGgatagaggaggaggaggagagggaggatgaAGGCCAGGGAGCTGGAGAGGAAGGGTTTAAGGAGTATGAGGGCCAGTTACCCGAGGTCCCCGGAGCGGGAGACACGGACCCAGACAACGAGAGAGTGGACGAGGACGAGCTGGATGAGATCTACGAGTTCGCCGCCACGCAGAGGAAGCTGGTGGCCGGGacgcagagagagagcacacaggaggaggaagaagaggaagaggaggaggaggatgtcGGAGGACTGGAGTCAGAAGTGGAGGAGGaccagaggaggaagagagaagaggTTGTGTGGCCGGGGAAGCGTCTGTTTTCTCCACCAGCTGATCCTCCAGGAGATGGGGATTTGGGAGGCGCCTGTGGAAGCACAGAGAAGGGGATTCCGGCAAACCTTCCGGTCCCAGTAGACCGTGAGAAAGACGGAACCAGTTTGGACACCAGACTCCATTGCGACCCCAGCCTGGATAAGAGCTACGACAGGATATTCTCAGAGTCCTGGGGGGTGTACGTGGAGCCCTCCCAGCAGGACATCAGGACCACAGAGGAGGTCCAGGATGGGCCGGGAGTGGAGGTATGCGGTCCAGCGAGAGGAGGAGCACTCCAGCCAGATCCCAACAGCAAGCCGCTCGTCATCGACCTGTCCATCAGCCCCCCCCTCAGCTCCGCGCATTCCTCTCCTCCCCGCTCGGTCTGCAGTCCCGCCTCGTCCCTGGCGTCCCACCGGAAATCTCCAGGAACTAGAAACGCAGCCCCGGTGGGGTTTGGGAATTCGCCCACTAGTAGGTTTTTCTTCAGTCGCAATCCTGGAAGCGGCCAGAAGCGGACAGGAGGACTCGGGGAGGAGCCCGGGCAACGTGCTATTGGGACTCCCAAAAAGTTGTTCTTTGCCAGCAGGGAGAGAAGCACCCCAGAGAAGAAACCTCCACACCTAGCCACCCCCAGGACACCCCCTGCTTCCAAGCCAGAGGacgtcattgtcctgctggactCCGATGAAGAAATGGAGCTCAAGCAAAGGAGCACGGCATCTCAGGCGatcaaaaatgaaagaaaagcctCTCCAGGCGGGCCACCCCCCCAGGACAACGCAAGTGCCTCTGGTTTGGCCCTTCTGGAGCCGGTCGAACCGAAAACTGATGAAGATTCACCAAGGACCCTGATAAAGACAGAGGACAGGTCCCAGCAGTCTCCTGATATCTTCTCTCCCGGTGCGGACTTGCCCGGGGAAAGATCCCTGGAAGCCGGCAGATTTACCCTCAGGCTGAGCAGCCAGAGTGAGCTGGGCCAGGATGACAGCATGGAGACGTCCTGGCTGGTCCCTGGCACTCCTACCCTTCCAGTCATGGCAAGGAGCATATCCACACAGACCCACAGCTCCATGAACGCGCCAGTCATCAGACGGACTAACCTGTTTCCCGCCGAGTCAAGTTTGGCCCAAAGCAGCAGCTCTGCAAGGTCCAAGAGCTCCCTGATCGCTGTGGCTCTCGGCCGGAACTCCAGTGTCTCTAaatccaccaccaccaccctaAGGCATGGGGGCCCTCAGCGGTCACACACAACAGCAGAGGCTGAAGCCAGAGTCCCGGTTGTGTCATCCAGTTCCGGTTCGGGTCACCAGGTGTCTCCAGTGAAGCGCAGCAGTCCCGAATGTTCTCCACACAGATTAAAAGATGGGGGCAGGTTAGCGCTGGTCACTAACAGTCAGGACCTGTCCTCACCTGAGCCCATCGCTCCCTCTTCCCAACTTCCTATTGAAGACTCTGTGTTACAGCGCAGCTCTTCTAACCTTGCAGCAGAAGCCAGCCTCGGTCCGGCAGACTCACCCCGTTCTCCCAAGAGCACAAATCCTGTCAACAGTACGGTGCCAAGCCTCGAGAGCTCTGCCGCCGTAGGGCTGCGTTCACCAGGGTCACGGGGCTCTGCGGACTTTCAGGACCGGGTACGGGACTGTAACTTGAGCAGCATTAGCTGTCAGTCCCCCAGAGGCGGTGAATTTAGAAGCACAAAGCAAAACCATGAGCAGGAAACCCCCCTCCGACCCGAGCACAGCTTCTGCCTGTCTGACGAGCCACCCATGCCGTTCGATGACACGGGCTGGGGCTTCCCCGAGCCCCTGCACTCGAGCCCCCTGGGGAGCAACGGTCCGGCCACGCCTCCTGAGACAGGAGAGGAAGACGCCCTCACCCCACCTCAGACGTCCCCTGCTTCTCCCCGGCCTAGCTGCCTCCCGGCCCCCCGGGATGAGAGGTCCCCAGAGGCCCACCCCAGCTTCCTGGACTCCAAGCTCTGGGCCGactgggaggaagaggaggtcGTCCTGCCTCTGTCACAGAGAGTGTCTGCGGCCGCCCCCACGCAGCGGGTGAAGGAGCTCCGCACGCCAGTCGCCACCCAGAAGACATCCCTGGGCCCCCTGGTGCCCATTACCCCCATGCCCACCTACTCTGACATGGACACCCCGGAGCTGAAGACCAGACTCAACAGGTTCGGTGTCCGCGCTTTGCCCAAGCGCCAGATGATCCTGAAGCTGAAGGAGATCCACCAGTTCACTCACCAGGTGATCAGCTCCGAGTCTGAGGACGAGGGACCCTCCCCGCCGCGCCCATCCGCCCCATCGCACCGCCGACCCCCGGCTCCCCCACAGGTGAGCATGGCCCCAGCCAGCTCTGCTGTGGCAGGAGGAGCGTTTAAGGAGCCAGCAGGAGCCGCGGTGCGGGGCCCTGGCATCTCTCCTGTGAAAGCTGGGGACTCCGAGGACCCCGAGCTGCTGACGGCCTCCCAGTGCTCCACTGCCTCCTCCACCGCTGCCAGTGAGGACTCCTTCTCCTCCCAGAGGTCGAACCCGGAGGACGTTGAGCTCTCTGGggacgaggacgaggaggacGGGGTCACGGCGTCCCAGGCGGCGACGCGGGAGGAGGACAAGCTGCTGGCCGTGCGGCGCTTCATCACGTCCGACCCCGAGCTGCACCGGTGCGTGCTGCTCTACCAGCCGCTGGTGCTGTCCCAGCTGCAGGCCCGGCTCCGGCAGGCGGGCATCCGGCTGGGCGCCACCAAGCTGCTGGATTTCTTGGACTCCCAGTGCATCACCTTCACCACCGCCAAGCCGGGCCAGCCCCGCGGGCAGCGCCGCCGCCGCCAGAGAGGGGGCAAGACCGGCAGCCAGAGAGCGAGGGGCAAGGATGGGGACTGAGGGGGCCGCTGAGGAGGACAGACCCTGTACAGGGATGTGTGATGGGTTATAAGGAAGGTTATGGAGTGTAGATTGGAGCTTTAGAAGTTCCCTCCCCCGCGCCCCGGCCAGCGCACCGATATGGACTTCCCTGGAGTCCCATTGGTCAGGATTTCAGTGTGTTTCGATAAAGGAACAGCAGGCCGAGATGTAATTGGACAATAAAGGCCGGCGTTCTTGAAACCCAGTGCCAACATGTTATCAGATGCGCTGATGAATGCATGGGTTTCTGGCAACACAGCGGGACTAGTTTGTGATTCTCTGTGGTTTCtggttttgtgcattttgtcGTCCGTGACTGGCTTTTGGCGTTCAGCTCTGAATTGGATTCATTTCAAACATGAAGAGTTTGCCGTTCCCGAGTGTTTACATAGCAGGTGTCTGCGGCTGAATGGAGACTATGAGGCAGGACAATTCGGAGACATCCTGCGCAAGCTCCGGTCCAGAGACTGTCCAGGGCAGCACCGAGGTCCCCGGATCCAGTGAAGCTGCATTTCAGTTCCGGACACAGACTCCCTAAGCGCGTCCGGTCCAGCGGACTGTGCTGCTACTCGATGTCTGCCGGCACATGTCCAAACGCCACCAGCAGTTCTGAGCTCCcgttcttgttttttaaatcagtgatgttttgtctatttttaagGGTCATggttgtgcatttgtttttttgtttggatattatgtgaaagtttaaaagaagtgttgtaatacttttttatgCTTTGTGATGCACTTGAA

Function

GO: NA

KEGG:

id description
K10484 BTBD12, SLX4; structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143296 lncRNA upstream 126554 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 343128 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 371675 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 409155 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 419622 1972926 ~ 1973683 (+) False AMCG00018105
TU143377 lncRNA downstream 9068 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 15398 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 89904 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 172228 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 207734 2609143 ~ 2609412 (+) True G114548
AMCG00018129 mRNA upstream 1307 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018126 mRNA upstream 11218 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018127 mRNA upstream 59274 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018125 mRNA upstream 87861 2302964 ~ 2305444 (+) True AMCG00018125
AMCG00018124 mRNA upstream 101545 2281697 ~ 2291760 (+) True AMCG00018124
AMCG00018131 mRNA downstream 19856 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018133 mRNA downstream 31989 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018130 mRNA downstream 33047 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018132 mRNA downstream 48380 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018138 mRNA downstream 172986 2574395 ~ 2579357 (+) True AMCG00018138
TU143173 other upstream 412926 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 412926 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 412926 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 412926 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 414578 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 164675 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 239437 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1790308 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2200081 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2360109 4761518 ~ 4763905 (+) True G115049

Expression Profile