RNA id: AMCG00018129


Basic Information

Item Value
RNA id AMCG00018129
length 3268
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00018129
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2385300 ~ 2391998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATTCGGAAGCGCCCGGCGACCGTAAACACGCTGTTTGCGCTAGCGAGGTCaagactggagagagagagagcaagatgTCTCGGTACCTGTCTCTGATGCGGTGTGTGCTGGGAGCCTCGCAGCGCAGTGACCTGCGGCTCCTGCTGCCGGCCGGGCGAGTGTGCGGACATCGGCCTCTCGCTGCGGCGCTCAGCAGTGCGAGCTATGCGGGAGGGAGGCGTGCGGTGCGGGGCAGTGTGGGCGAGGGGCGGGCCCCCGGTGGCTGTTGCTCCCGTCCTCCTCTGCCCAGCCTGGCCCTGGCACGTCGAGCACACAGCACCCAGACAGCGGAGAGCAGCGAGGAGGAGCCCCTGCACACCATCATCAGCGACACGGAGAACGTCAAAGGCTCCTTCTCCAAGCATGAGTTCCAGGCTGAAACCAAGAAGCTGCTGGACATCGTGGCCAGGTCTCTGTACTCCGAGAAGGAGGTGTTCATCCGGGAGCTGATCTCCAACGGCAGCGATGCTCTGGAGAAGCTGCGGCACAGGCTGGTGTCGGCAGGCGGGGAGACCCTGCCCATGGAGATCCACCTGCAGACCGACACTGCTAAGGGCACCTTCACCATCCAGGACACTGGCATTGGCATGGGCAGAGAGGAACTGGTCTCCAATCTGGGCACCATCGCTCGCTCAGGCTCcaagGCCTTCCTGGAGGCCCTTCAGAGCCAGGCCGACGCCAGCGGCAAGATCATCGGGCAGTTTGGTGTCGGCTTCTACTCGTCCTTCATGGTGGCAGACAAGGTGGAGGTGTTCTCTCAGTCTGCAGAGCCAGACAGCCCGGCATACAAGTGGTCCTCCGACGGCTCAGGGCTGTTCGAGGTGGCCGAGGCCAGCGGCGTCAGACAGGGAACCAAGATCGTCCTGCACCTGAAAGACGACTGCAAGGAGTTCGCCTCCGAGGACAGAGTCAAAGACGTTGTCACCAAGTACAGCAACTTCGTCAGCTTCCCCATCTTCCTGAACGGCCGGCGGCTCAACACCCTGCAGGCCCTGTGGACCATGGACCCCCGGGAGATCAGCGACTGGCAGCACGAGGAGTTCTACCGCTACGTGGCGCAGGCGCACGACAAGCCCCGCTACACCCTGCACTACCGCACCGACGCGCCGCTCAACATCCGCAGCATCTTCTACGTCCCGGAGCAGAAGCCCTCGATGTTCGACGTGAGCCGGGAGCTGGGCTCCAGCGTGGCGCTGTACAGCCGCAAGGTGCTGATCCAGACCAAGGCCGCCGATATCCTGCCCAAGTGGCTGCGCTTTCTGCGAGGCGTGGTGGACAGTGAGGACATCCCCTTGAATCTCAGCAGAGAGCTCCTGCAGGAGAGCGCCCTTAtcaggaagcTGAGTGAGGTTCTGCAGAAGCGGGTGATCAAGTTCCTGGTGGATCAGAGCAAGAAGGAACCCGAGAAATACGCCAAGTTCTTCGAGGATTACGGTCTGTTCGTGAGGGAGGGCATCGTCACCACGGCCGAGCAGGATGTCAGGGAGGACATCGGCCGGCTGCTGCGGTTCGAGTCATCGGCGCTGCCCGCAGGGCAGCAGACCAGCCTGCAGGAGTACGCCAGCCGCATGAAGGCCGGCACGCGCCACATCTACTACCTGTGCGCCCCCAGCCGGCACCTGGCCGAGCACTCACCCTACTTCGAGGCCATGCGGCAGAAGGACATGGAGGTGCTGTTCTGTTTCGAGCAGTTCGACGAGCTCACCATGCTGCACCTGCGCGAGTTCGACAAGAAGAAGCTCATCTCTCAGTCTGAGGAGCTGATGGCCTGGATGAGGAACGTCTTGGGGCAGCGAGTCACCAACATCAAGGTGACGCCCCGTCTGGACACCCACCCGGCCATGATCACGGTGCTGGAGATGGGTGCGGCTCGGCACTTCCTGCGCACGCAGCAGCTGGCCAGGAGCAGCGAGGAGCGCGCCCAGATCCTGCAGCCCACGCTGGAGATCAACGCAGGgcaCGACCTCATCAAGAAGCTCAATGAGCTGAGGGACTCCAACGCCGATCTGGCCCAGCTGCTGCTCGAGCAGATCTACGACAACGCCATGATCGCGGCCGGCCTGAACGACGACCCCCGGCCCATGATCGGCCGCCTCAACGACCTGCTGACCCGAGCCCTGGAGAAACACTGACCGCGGGACGGGCACCGCCCCCCCATGCCGACCAAGAGGACTGGCGAACACTGCGACTCAGACTTTGAACTGCTGCCACGGGGCATCTCACCACagttgacctctgacctctatGGCAGAGGTCCATGCGAGTGACGTGCTCATCTCCCCGCAGGACTGAATACCAGGAACTGACGAGATCTCTACTACGCAGACGACCTCTATTGGCATCCCCATTGCATCGCATTGTTACAGAAGtgtgtctgttattttttactttgcattGCGAGTCTGAAGGAGAGAAACAGATCCACGGCACTGCAGCATTTAACAGCGCTTCAACTCGAGCAACGCAGCTGCCCTTCTGTGTGGAGCATCTCTCGAGTTTTACTCGTCTACAACATGTATAACGTATCCGTCCTGTTAGACACATCTAGCTGTTGTGGTGAAATCAGACGCCCCCGACCTTTACACTCGGTGACGGAGAGAAGCTCATATAGACGGTTAAATGTGAATGTTAAATGTACGGGAGTTCAGATTGTGAAATTCCTGTCTTCTCACAGATTGGCTCTGACCTCGTTgtcaaacaaattacaataaattattaCAGTTGTTTTTCTGGTTCACAGTCTTGTGTCGAGGAGAAAGTGTCATTTACGTGAATAAATCCTTAAAACGATGATAAACACAAGGTGGGGAAGCGTGGAGAGCCAGCGACCTCTGAGATTGCCTGAATGAGGGATTCCCCACATCTTAGATTAGATTCTGAATTTCTGTTCCTGATTTAGGAGTTGACTTTGATTCGATTCCtcttaaaaagcacaaaatatatattttatccgAATTGTTTCAAATCCCAAATGTGCAACTGTAATAAATTCAGAAGTCCTGCCCCTCCCTCTCTATTCCTGATACATTATATATTGATGGGATCTTTTTTCAATTCTCTCCCAAACCCCGATTCTGAAGGGAAGCCAGTCGTGGAAATgtgatgctttaaaatgtttcttgtgtaaagtGGAAGTCGCGCtggagaaataataattatactactactaatgtgAATAAAATGAGTGTGGGGCTTTAGTtcctaatattattattattattattat

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09488 TRAP1, HSP75; TNF receptor-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143296 lncRNA upstream 118549 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 335123 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 363670 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 401150 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 411617 1972926 ~ 1973683 (+) False AMCG00018105
TU143377 lncRNA downstream 18479 2410477 ~ 2412789 (+) True G114484
TU143378 lncRNA downstream 24809 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 99315 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 181639 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 217145 2609143 ~ 2609412 (+) True G114548
AMCG00018126 mRNA upstream 3213 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018127 mRNA upstream 51269 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018125 mRNA upstream 79856 2302964 ~ 2305444 (+) True AMCG00018125
AMCG00018124 mRNA upstream 93540 2281697 ~ 2291760 (+) True AMCG00018124
AMCG00018119 mRNA upstream 118525 2247853 ~ 2266775 (+) True AMCG00018119
AMCG00018128 mRNA downstream 1307 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018131 mRNA downstream 29267 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018133 mRNA downstream 41400 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018130 mRNA downstream 42458 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018132 mRNA downstream 57791 2449789 ~ 2464758 (+) True AMCG00018132
TU143173 other upstream 404921 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 404921 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 404921 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 404921 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 406573 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 174086 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 248848 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1799719 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2209492 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2369520 4761518 ~ 4763905 (+) True G115049

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049619 True 2281 mRNA 0.53 18 NC_007114.7 9588728 ~ 9625904 (+)