RNA id: AMCG00018130


Basic Information

Item Value
RNA id AMCG00018130
length 3165
RNA type mRNA
GC content 0.63
exon number 30
gene id AMCG00018130
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2434456 ~ 2443528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCGAAGATGACTGCCGTGCAGTGGCACTCTCGAGGGCGCTGCTATGAGGCCGAGCTGGAGGACCGGCGGCCCGAGGCGATGCTGGTGGAGTTTGGGGACTACCACCCTCTGAAGCCCATTACGGTGACCGACTCCAAGACGCGGCGCGCGGGGCGAAAGGGCagctcgtcctcctcctcctcctcctccagctccgcCCCCGACCCCCTCAGCTCCATGCTGGATGGCACCGACCCCCTCTCCATGTTTGCCGCCGCAGCCAGCGAGACCCCCGGCCCATCGCTCGGCGCCACCAACCCGGGGGAAGCAGGCAGGAGGAGgcgggagaaggaggaggaagtggCCGTGGGCCCAGACTTCGAGCCCTGGGCGGCCAAGCGCAGTGACATCCTGGCCAGGTTCACCACCACCGAGAAGCTGTCTATTaACCTGTACATGGGGTCTGACAAAGGCAAGGCTCCCAGTCCCGGGACGACGGTGTCAGAGAAGGTGCGCAACCGATTGGAGGAGCTGGACGACCTGGAGGAGGGCTCACAGAAGGAGCTGCTGAACCTGTCCCAGCAGGACTACGTCAACCGCATCGAGGAGCTCAACCAGTCCCTGAAGGAGGCGTGGGCGTCCGACCAGAAAGTCAAGGCCCTCAAGATTGTCATccagTGCTCCAAGCTGCTGTCCGACACCGCGGTGATCCAGTTCTACCCCAGCAAGTTCGTCCTCATCACCGACATCCTGGACACCTTCGGGCGTCTGGTGTACGACAGAATCTGGACCATGTGCTCCGACACGCGGCCCCTGCCAGACTTCTTCTCCCCAGATGATGTCAACGACACGGCTAAGGAGACCTGTCTCAACTGGTTCTTCAAAATCGCCTCAATCAGAGAGCTCATTCCTCGGCTGGTCTTTACTCCCCTGTCCCTGCTGGCCGGCCCCGGtgaacagatgtgtgtgtgtgagatcacAGCTGTGTCTGACTGTGCTTCACAATCCCTGCTCCGCCCTTCCTTCACCATGGCGCTCAGATACGTGGAGGCCGCGATCCTGAAGTGCAACCGCTTCCTGTCCAAGGCGGGCATCCAGGACACACTGCTGCGCCTAACTGCCATGATCCGAGGCATCGGGGACCCTCTGGTGGGGGTGTACGCCCGAGCCTACCTCTGCAGGgtGGGTATGGAGGTGGCCCCCCAGCTGAAGGACAGCCTCAACAAGAACTTCTTCGACTTGCTGACCTCGTTCCGGCAGGTCCACGGGGACAGCGTCCAGAACCAGCTAGTCCTGCAGTGCGTGGAGATCCCAGCCTACCTCACGCTCTACTCCCCCGCGACGCACTGGGTCCTGCAGTGCGTCTCCTACCGCGCCCCCGAGGCCCTGTTGACGGAGATGATGGAGAGGTGTAAGAAGCTGGGGAACAATGCCCTGCTGCTGAACTCGGTGATGTCGGCGTTTCGGGCGGAGTTCATCGCGGCACGCGCCATGGACTTCATCAGCATGGTCAAGGAGTGCGACGAGGCGGGCTTCCCGAAGcacTTGCTGTTCGGGTCCCTGGGCCGCAGTCTGGCCTGCACCGACCCCCCCGAGGCGGACAGGCTGACCATCCTGAACGAGGCCTGGAAAGTCATCACCAAGCTGCGCAGCCCCCAGGACTACATCAACTGTGCCGAGATCTGGGTGGAGTTCACCTGCCGCCACTTCACTAAGCGGGAGGTCAACACTGTGCTCTCTGACATCATCAAACACATGACGCCCGACCGTGCCTTCGAAGACGCCTACCCCCAGCTGCAGTGCGTGATCACCAAGATCCTGACGTACTTCCATGACTTCTCCATGCTGTTCTCCATGgagAGGTTCCTGCCGTTCCTGGACATGTTTCAGAAGGACAGCGTGAGGGTGGAGGTGTGCCGCTCCATCATGGAGGTGTTCATCAGGTCCGTCAGTCcgcgtgtctgtctgtcactccCGGCGCCCCTGTGCGTCTGTCCATCCGCGGCTTCTCCTCACACCGCTTGTGTCTCCGCCCGCAGGTACCAGCAGGAGCCGACCCGAGACCCGGTCATCCTCAACGCCCTGCTGCACGTCTGCAAGACCATGCACGACTCGGTCAATGCCCTGACTCTGGACGATGAGAAGAGGTCTCTGGCACTCCTGATCAACGGCTTCATCAGAATGGTGTCGTTCGGCCGGGACTTCGAGCAGCAGCTGAGTTTCTGCGTCGAGGCGCGTGCCACCTTCTGCAACCTGGAGCCGGTGCTGGTGCAGCTCATCCACacgGTGAACCAGCTGGCCATGGAGACGCGCCGTGTGATGCGGGGCAGCCACTCCCGGAAGACTGCGGCCTTTGTCAGGGCCTGCGCTGCCTACAGCTTCATCACCATCCCCTCCCTCACCAGCATCTTCAGCCGCCTCAACCTTTACCTGCTGTCCGGACAAGTGGCGCTGGCCAACCAGTGTCTTTCCCAGGcgGACGCGTTCCTGAAGGCAGCGGTCGGCGTGCTGCCCGAGGTGCCGCGCTCGCTCAGCGTGGAGGGCAAGGTGCGCTCCTCTGAGGGCTTCCTGCTGGAGTTCATCAACAACTTCATGTCCACTCTGCTGGTGGTGCCCgaCCACCCGGAGCAGGGCGTGCTGTACCTGGTGCGCGGGCTGCTCAACGTGGTCCAGGAGTACAGCTGGGAGGACAGCAGCGACGCCAAGGTCCGAGTGTACATCAGTGCCCTGCAGCTGCTGGCGGCCATGAGCCAGGAGAGCTACCTCTACTGCGTCCCCAAAGTGGACTCCAATGAGAAGCTCTATGGCGGCGATCCCAAGTTCATGGCCGAGATCAACAAGCTATGCGAGACTCTGATTGGCCAGGTCCTGGACCACCTGAAGACCCTGGGCAAGGAGGAGAGTCTGCGCAGACAGAGCTCGCTGGCCTTCTCCCTGTTCGGCTGCCTGCTGGCCCACGGAGACCTGCGCAAGAGCCAGCTCAACCAGATGGCCGTCAGCCTGTGGAATCTGAGCCAGAGACACGGCGTGGCCGACACCCGCACCGCGgttcgCACCCTGGAGGCCATCAAGCAGCAGAGCCGCCACCAGGACATGAGCCACTTCTCGGAACTGGCCCAGCGGCTCCCCCTGCAGACCAGAACCTGAAGCTAGAACCGGACCCCGCCCCCACGCCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143378 lncRNA upstream 16660 2416807 ~ 2417796 (+) True G114485
TU143377 lncRNA upstream 21667 2410477 ~ 2412789 (+) True G114484
TU143296 lncRNA upstream 167705 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 384279 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 412826 2006906 ~ 2021630 (+) True G114346
TU143420 lncRNA downstream 47785 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 130109 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 165615 2609143 ~ 2609412 (+) True G114548
TU143461 lncRNA downstream 224932 2668460 ~ 2668661 (+) True G114553
TU143463 lncRNA downstream 227379 2670907 ~ 2742686 (+) True G114555
AMCG00018133 mRNA upstream 800 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018131 mRNA upstream 1474 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018128 mRNA upstream 33047 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018129 mRNA upstream 42458 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018126 mRNA upstream 52369 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018132 mRNA downstream 6261 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018138 mRNA downstream 130867 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018146 mRNA downstream 255300 2698828 ~ 2717437 (+) True AMCG00018146
AMCG00018145 mRNA downstream 273974 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018144 mRNA downstream 339534 2783062 ~ 2786522 (+) True AMCG00018144
TU143173 other upstream 454077 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 454077 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 454077 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 454077 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 455729 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 122556 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 197318 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1748189 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2157962 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2317990 4761518 ~ 4763905 (+) True G115049

Expression Profile