RNA id: AMCG00018131


Basic Information

Item Value
RNA id AMCG00018131
length 2977
RNA type mRNA
GC content 0.68
exon number 16
gene id AMCG00018131
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2421265 ~ 2432982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGAGGCGCTGTTGGCGCGGGAAGATGGCGGCGCTGGGGGCGGCCGGCGGGCGGCGCGTCCCTCCTCAACCGACAGCGATTCAATAAACATGTCGGCGAGAGCAGGACCCGCACACCGCGCCGATACTGGATCATCTCGCCGCAGACCAGACGAGCAGTCCAGACAGCCGGCTTTAAACAGCCAGTGTCAGATCGGCCGGCCCGAAATGGAGAGCTACGAGGAGTTCTGCACCCATAGCCTGGCGCGTCTTCAGGCGGAGGGGCCACTGAGCAGCGTGACCACCGGCCAACGGGGGGCGCTCTCCATCATCCAGTTCCATGGCATGGCAGTTCTGTCTCCTCTGCTGAGTGCGGAGCAGCGGCAGGAGATGACGCAGTACCGGCAACGCGCCGTGGAGCTGGAGGCTGGCCGGCTCAGTGTGCGCCGGAGCACCCTGCTGTCCCGGGTACAGGACATCCTGGACAGCGTGCAGATGCGCACGGTGCCAAAGGAGGGAGAGACGGCCATGGCCCCCAGCCGCTGCTCCCCCAAGTCGGAGGTCATGAATGGCTTTGCTCTGCTGCCGGACATGAACGCGCTGGGGCCCTGGGGGGGCAGTGTCCCGCTGAGAGCCGCCCCCAGTGAGCCGCTCCCTCAGCCCGACAGGGAGCGGGGGGAGTTGGAGGAGGAGGACCCCAGCTACACCATGAGCCTACAGAGCCTGCTGAAGAAGTCCCGGGAGTACCTGGAGAGAGAGCACAGCCGGCGCGGGTCCCGGGGCCACAAGGGGGCGCCGGCGCTGGGCGAGAGCCTCTCGGACAAGGAGAACGAGAGCGGCGGGGGCAgtgtgggggcggggggcgaGCAGCCTCACTGTGAGGACCACCAACACAGTGACAGCCCCCTGGCCTGGCCCACCACCCCTGCCCCCGTCCAGCAGCCGAGCTCGGACTCGGACAGCCCCGACTCTCTGTCTGTTCTGCCCCGCAGCCTGACGGGCTCCTACGCCCGGCTGCCCAGCCCCGAGCCCAGCCTGAGCCCCCGGGTGCACCGCCGCCGCCCCCGGCCCCTGTCGGCAGGGAACATCGTCATCACGCGGCCCCTCAGCGCCTGCGAGCTCAGCCCCCGCCCGGACAGGCAGCCCCTGCACGAGGACAGCGCCGTGCCAACACTGCAGGCTGTGCCGGGAGAGCCGGGCCCCTGGGAGCCCAGAGTGGAGCCCTGCCCGGCTGAGCTAAGGGTGCCCTCCACCCCGCACAAGAGGCAGAGCAGCCCCCTGGGCCAGGAGGAGACGCTGGGAAGGGAGACCCCCGAGTTCCGCAAGCGCTCGCAGACCCTGGACAGCCAACTCTCCCCCGCCGGCCCGCGGGGCTCCCAGGAGAGGATCCCCGGCTTCCTGGGCAGCCTGCCCCGGCGAGTTCCCCGCCGCCGCTGCTCCCCGGCCCCCCTCAACCAGTCCTACGACGTGGAGAGCCCCTCGCCCGCCCTGCTGCGGCCCTGTGTGGACGGCGCCTCGCCTGAGGGGGGCTCTGCCAAAAAGAAGCTGGAGGCCTCCCAGGGGTCCAGAGAGGGCAGGCTGACTCCCAGTCTACCGGCCACCCCCGGGGAAGAGCCGCGCGGGTGGGATCAGACGCCTGGCAGCAGCGTGGGCGAGGGGCCGGTCAAGAGGCAGGCCGCGGACGCCGGCCCGGACTGGAGGGGCATCAGTGAGAGCTGCCCCGCCGGCCCCACGGTGGCCCAGGGAGAGCGCTCGCCCACCCACATGTCGCACAGCCTAGGTTTCCCCCCCCAGCCCGTCGCCTCGAGCCAGTCACCCTTCTACCTGCGGGGGCCGTCCTGGATGGGCAATAAGCCCCGGAGCAGAGTGTCTCAGGCCATCCCCCCTGAGCTGCACCAGCGCTTCTGTAGGCTGAGCGCCGTGGCCAAGGGCTTCCTGACGCGCCGGCTGCTGCTCACGGAGAAGGTCAAGCACCTGCGGCAGACAGTGCAGGACACCCAGGAGTTCATCAAGACCTTCCAGAGCGAAGCCCCCCTGAAGAGAGGGGCCGTGTCTCCCCAGGACATGTCCCTGCAGGAGAGAGTGCTGGCCCAGCTGCGGGCGGCGCTGTTCGACCTGCATGACGTCTTCTTCGAGATGCCGCTGAGCGAGAGGCTGGCGCTGCTGCAGCAGGACCGGCAGCTGCGCACAGAGAGGAGGCTGAGGGAGATGGAGAAAGCCAGGAGCCCCAGAGAGAGAGTCACACTGTCAGCTGCCACACAGAAGTCCCTGGACCGGAAGAAGCAGAGCAGAGCCGCAGACACGGGGGGGCACAACAGGAAGGCCACGCAGAAGCCGAAGAGCCCGACAACAAACAGGATCCTGCAGCCGAACCAGGGCCAGAACGCCCCCCCGCCCGGGCAGCTGCACCGACAGgggagTCTGTACCAGAAGAACCTGGAGGAGCGTGTGAAGCGCTGCGACAGCCTGAGGAAGCAGCACTCCCTGGCGACTCGGACCCGCTCCTCCTTCAGGCTTTTACTGAAGGCGTTTATTGACACTCCTGAGAACGAGCAGATGCCATTGTTTTACCAGCATGCCAAATTAGAGAGCCGGGTCTGCGTGCCTGAGGATCCCCGATCGTGGCCGGATCGTGGCTGTGCCACGGTGGCCAGTACCTCAGGCCTGGTTTCCCCTGAGGCGCGGGGAGATCCATCGCTCTCTCCCCACGATGAGATCCGTGAGGCTGAGCTCAGGCGAGGCCATCTGTTGGTCAGAGAACACAGATATCTGTGTGTTCAGATCGTGTCTCAACGCTGGGATGGGACACCGAGGCGAGGGGCTCCCACGCCAACATCCAACCCCCACCTCCACCTAGAAACAGTGCAGCTAACAGACCCCCATaccctcagTTTTGCCAAGTCTATGTCTGTGCCCGGCTTCCTGCCCGGTGCCGGCGCTGTCTGGGTACGGCCTGCCTCGTGTCTCAGTCAGGCCCTGTGTCCTCCTTCAGGCTGA

Function

GO: NA

KEGG:

id description
K16453 CCP110, CEP110; centrosomal protein CEP110

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143378 lncRNA upstream 3469 2416807 ~ 2417796 (+) True G114485
TU143377 lncRNA upstream 8476 2410477 ~ 2412789 (+) True G114484
TU143296 lncRNA upstream 154514 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 371088 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 399635 2006906 ~ 2021630 (+) True G114346
TU143420 lncRNA downstream 58331 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 140655 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 176161 2609143 ~ 2609412 (+) True G114548
TU143461 lncRNA downstream 235478 2668460 ~ 2668661 (+) True G114553
TU143463 lncRNA downstream 237925 2670907 ~ 2742686 (+) True G114555
AMCG00018128 mRNA upstream 19856 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018129 mRNA upstream 29267 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018126 mRNA upstream 39178 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018127 mRNA upstream 87234 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018125 mRNA upstream 115821 2302964 ~ 2305444 (+) True AMCG00018125
AMCG00018133 mRNA downstream 416 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018130 mRNA downstream 1474 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018132 mRNA downstream 16807 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018138 mRNA downstream 141413 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018146 mRNA downstream 265846 2698828 ~ 2717437 (+) True AMCG00018146
TU143173 other upstream 440886 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 440886 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 440886 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 440886 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 442538 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 133102 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 207864 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1758735 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2168508 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2328536 4761518 ~ 4763905 (+) True G115049

Expression Profile