RNA id: AMCG00018132


Basic Information

Item Value
RNA id AMCG00018132
length 1301
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00018132
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2449789 ~ 2464758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCCAGTCGACCTGAACAGGAAGACCCGCAGAACAGACCGGTTTTCCCAGTTTGAGGCGGCGCAGCCCCGCGCCCCTGACCATGTCTGGACCGACACCGGCTCCGTGGCCACCGACGTCACCCAGTACAGCGCCAGCAAGCACACGCCTGTGTTCTACAGCCTCCTGGCCGCCAAGgtggcGGTGGACAGTGACCCGCTGGAACACTTCGACCCGCTCCTCTCCCACCCTGCCTTGGCCGGCTACACCGTGTCGGAGAGACCCCCGCCTCCCAGCCAGACCCCCACGCCGCAGCCCAATCAGCCCACCAACTGTGAGCAGTTCCTGGAGTGCAGTGTCTTCCCTGTGCTGCAGCCCGGACTGGAGGCCATGCTGAGAGAGGCTCAGACACAGCACTGCCTGGAGAGAAAGAGGCTGTGGTCAGGGTGCTCGGACAGGCCGGGCCCTGGTGTGCGCTGTGAAGCTCTGAGCTCTCGACGCGCTGGCCCTGAGAGCGGTAAAAACCCCCGCAGACGGGAGCAGCAGCCAGTGGGCTTTGAGGAGATCCCTTTCGTGGCGGACTGGCTGAGAGAGCAtcCTAGGCCTCCTGTTCCTCTGTCTTTGCTGCTGTCAGAAAATGAGGCTGCAGTTCTGATCCAGTCCTTCTGGAGAGGCTACAAGAGTGAAATCAAGCCCGCACTTAAGGGAGCAGCTGCCGTGTTTAACACCGCGTCCAGCACCGGAGATGTTTTATGCAGCTGCCTGTGCCGGAGTGAGCGAGAGCGAGAGTGTGGGGGCCAGTCCGTGCTGGAGAGCAGCGCTCCGGTCCGCCGCGAAGAGGAGGTACAGGAGCTGCGCCAGTGGCAGAGGGAGCTGAGAGAAGAGAGCCGCAGCATCAGCGAAAGAGTGGAGGAGTTCTGGGCCCAGTGCGAGTCccgagTGGGCAGCAGCATGGAGGACCCCCAGCTCAACCACTCCGGAGTGTCCATCCGGGTGCTGTCCCCGACCCCACAGAACACTGTCATCCTGCCTTCCACGACACCCAACAGCGCCGCCCTGTCCCCCGCTCCCTTCGGCACCGAAGACCTGTGACGCCACCTCGGTTCCGGCCCATCTACGGGGGCTTCTCCATCCCGGGACAAAGCCCTCTTACTGGCCGTCAAGAGCTAAAAGCATTCCTAAGTCCAGTTTGTCAACAAAGCGAATTACCTCACGAGGCCGGCAAGCAACATGGCCTATTCATAGATTTCACTGAatcagcaaaataaacacagagggAAAGAAAAGTCTCTCAATGTCAgtagtcattttgttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143378 lncRNA upstream 31993 2416807 ~ 2417796 (+) True G114485
TU143377 lncRNA upstream 37000 2410477 ~ 2412789 (+) True G114484
TU143296 lncRNA upstream 183038 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 399612 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 428159 2006906 ~ 2021630 (+) True G114346
TU143420 lncRNA downstream 26555 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 108879 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 144385 2609143 ~ 2609412 (+) True G114548
TU143461 lncRNA downstream 203702 2668460 ~ 2668661 (+) True G114553
TU143463 lncRNA downstream 206149 2670907 ~ 2742686 (+) True G114555
AMCG00018130 mRNA upstream 6261 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018133 mRNA upstream 16133 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018131 mRNA upstream 16807 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018128 mRNA upstream 48380 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018129 mRNA upstream 57791 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018138 mRNA downstream 109637 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018146 mRNA downstream 234070 2698828 ~ 2717437 (+) True AMCG00018146
AMCG00018145 mRNA downstream 252744 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018144 mRNA downstream 318304 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018149 mRNA downstream 323615 2788373 ~ 2793873 (+) True AMCG00018149
TU143173 other upstream 469410 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 469410 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 469410 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 469410 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 471062 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 101326 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 176088 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1726959 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2136732 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2296760 4761518 ~ 4763905 (+) True G115049

Expression Profile