RNA id: AMCG00018134


Basic Information

Item Value
RNA id AMCG00018134
length 3648
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00018134
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2443707 ~ 2449697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTGTCACATTAAGACATCAAGcaacaaaaatgacaacacaataatacaatttcgGCTGTTAAGTACAGCGCTTTGCATGTCTTGTCCTTATTCgtcttaaatgaaaaatgattttaaaagtgttcaAGTCAGCTTTGGATAGGACTGTAGGATTAGTGCTCTCATCTTTTCATTGACTGTGTGATTGGAAACCGCGATTTGTCCTTCGTGCTTCCCGTACTTCATGATGAGCATTGAACTGGGTTAAGAGTGATACTGCAACCCATTgtcttgtatttcttatttgtgCATTTGCACTGTCTGGGTGAGTTCGccaaaatacatctgaaatggtgtataatcataaataaaaccgAGCAAACCGTTTTAATTTGGTGTTGTCGACAAAATGTCTCGCATGCGGGGATTTCCTGTGCAGGCATTGCTGAGGTGAGGAGGTCAAGTGAGGTCATGAGGCGCAACAGATGGTGCcacctgagagaaagagagcagcagtagaggaggaggagaagatgaagagaaagaagaaaaagaagagctTGGAATCACACGGCTCCGCCGGCGGCACAGCGGAGGAGAGCAGAGACGAGAGGATGAACGGAGACGGGGGAAACTGCGAAGGGCAGGACAAGGtgatgaaaaagaagaagagaaagaaggTGGGGGAGGGCCGCACTGTGGAGGCGAACGGGGAGCAGGACGAGGCTGGAGAGGAGgggaaggaaaagaagaaaaagaagaaaaagaggcCTGTGGGAACGGAGACGGGGGACAGTGTGGCCGGGACAGGGAAGAGTGGCGGACCGGGGCGGACAGCAGGACCCAGTCATCTCGCACAGGACGAGGACAACGGCGCCATGCTGAGGCCGGAGGAGGAACAGAGTccgaggaagaagaggaagaagaagaaggtggTGATCGCTCAGTCGCACGCTGCGGAGGAGTCCCTGGAGATAACCGAGCCCAAGAGGccaaagaaaaggagaaagaaagggatTGTGGAGGAAGAGAACAAAGTGGACGGTgggctgagagagggagaagacaAACCCAAGAAGAGGAGGAAAGTCATGGAGGTGGAAAGCACTGAGAGGAAAAAGGGAGGGGAGGAAAAGCatgtgaagaagaagaagcaacCCCAGGCCGAGGAgccagagggagagagcgagggagcTGTGGAACTCCCGCTGATTGAGAGAAACGGAGGGGGGGacactaaaaagaaaaggaaaggcaaGAAAGGAGCGTGTGATGAGCGGAGCgtggtggaggtggaggaggaggtggaggtggaaaagaagaagaagaagaagaagaaacaaccCCAGGCCCAGGAgccagagggagagagcaatGGAGCTGCAGCTCTCCCGCTGACAAACGCAAACGGAGGGGGGGacactaaaaagaaaaggaaaggcaagaaagaagaagaagaagaagaagtggtggtggaggaggaggcggagaaGAAGACGACAAAGACAAGGAAGAAGGGAACGAAAAAGCAGATGTCGGAAGAGGCAGCTGGGCCGGAGGCAGGGAAGACACCAGGCAAGGAAGGGACGCTGCGGGAGGAGGAGCGCGAGGCAGCTGATGTGGCAAGGGACTCCctgaaaaggaagaaaaaaacgaTCGAGGTAGCAAAGGGTGCAGCCGCGAAGaaggggaagaagaagaaaatcaaggaggaggaggactcCGAGGAGGAGgCGCGGCGGGAGGCTCTGCAGAAGGAGATTGACCACGCGTCTCGCCCGCCAACCCTAGAGAAGCCAGCGaAGACAGCGGTTGGCTTCGGCCAGTGGGCCACGGCCTCCTTCGACAGCGACGACCAGCAGAAGAAGTTCCTGCGCCTGATGGGCGGGTTCAAGAAATCCTCGGTGGGCGGGGCCGGCTCACCGCGGCCGATCATGGCCCTGAGCCGCGACGAGGAGCAGCAGCTGAAGAGGGGGCTGCTGGGACAGTTCGAGAACGCACAGAACCGCCGCCTGGACCCCCACTGCCGGGGGGCGGGGCTCGGCTTCCAGGCCGCACCCAGCAAGAAGTTCTACATCGACACCCAGGCGTCCAAATCCATCAAGTTTGAGGACTAGAGCCCGCGGGGGCCGGGCAGCGCGAGGCTGGAGACTCGCTTAAAAACACCACGATATGATTCAATTTGACTGCCGTGATGCGCGGCCACAAGTGATGTTTCTATTCCAGGAATGATTGTTCAGGAACGCTGCAATAATCCTACCAGCCTCAACAACCGAAGCACTGGTCTCATTTTATTAACTCTTCACACTGTGCCACAGTAAAGCAACGCCAGGTCTgaactctgtctgtctgtctgtctgtctgtcatgtAATTAAGCCATCCACAGATAGAAGATGGTCTGTCGGTGCTTCTTCAGTAGTAAAACAGTCAGTCTGGTGCCTCGTTAGAGATCTCGGTATATCTGTTCTGTAAGGATTGAGTGAATGTTGTCCTCGCTGTAACTGCGGTGCGTTAAGAGTGTGTCGGCTGGACGGGTGCTGTGTGGGggtgtaattaattaatagagTGGACGCAGCATGCTCTACAGCGCAGCACAGCCAGCTCCTCCAGTTCACCGGGGGGGCGGCAGGAACACAAAGCCGGGGATCGTCGTCCGCTGCGTCTATTGAACAGGCTGTCCTGAGCCTCAAGGAGTCCCATCGAGATGCAGAACAGGCTGTGATGAGGTCACTGCTCCACAGGGGGGTGCACAGTGGGGGTCAGGTGATCATACCCTGCAGGTGGTGACAGGGGTCACATACTGGTCGTAACTCTGTAAGGCTGAATCAGTTTTGGAGGGGCTCAgtaacaattattaataatgacttGCCTGTTCAGCTGTGGCCAGAGGACAGCTCTCACCCCCCCCCAGTGGACAGCAGTGTTTGAAGCAACAGGAAACTGAACTCGGTTTCTGTTCTTTACTCTGCCTGTGTATCTGCCTTCAGTCCTGATTAAGTCCAGTTTGAATTGGGTCTGACTTTATTGCCTAATTGGCCCTGTGGAAAACTGAAGGGACTGACCTACACTATAGCAGAGACGCAGGTTATAAGTTTGGTGGTGCAAATAATGAACTCTTCTAATCAGTGCACTGCAGCGTGTAATGGGCCTGTTCCTGACAGAGtgtgttgtctgtttgtgtttgtgctcttCTGTATTTGGAGGCAAACAAATGAATTCCTGCCACAGAGTCAGAAAGGTGTTTTATGATGTCTTGTGAGATGTACAGTTATCTGACAATAAAGGCTATACATGAAATGGTGACATTTTGGCAGCTTGAATGATAATAGCAGTTCTAACCGGTCTCGCCTCTAATGCAGAACTGGATGTGAGGGAGGTGTGTCTccaggtgggggggcagaggaCACCGCAGTGTCCATCACAACGGGAGATGCTTAGAAAAGTCACCTGACAAGGATCTGCAACAAATGGTGAGTTTGGGATCAAATTAGCAACGTGCGAGTCCAGCCAGCTTGTGTTCCTGGGATGCTGGTCTTCCTTCGGATGGGTCGGCTGACATCGGGCTTTAATACTGGTCGCCTAGAAAACCTGCCAGGGCGGGACTGCTCCAACCCCCCCTCCGTAGTGATGGCGGAGTGGCGCCGGCCTGGCTGCGCTCTCCCGAC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143345 lncRNA downstream 67972 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 457986 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 459558 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 565332 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 596936 1751896 ~ 1846771 (-) True G114304
TU143460 lncRNA upstream 186804 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 218763 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 546338 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 627344 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 690398 3140095 ~ 3141310 (-) True G114720
AMCG00018135 mRNA downstream 23672 2411018 ~ 2420035 (-) True AMCG00018135
AMCG00018137 mRNA downstream 34912 2402298 ~ 2408795 (-) True AMCG00018137
AMCG00018122 mRNA downstream 223006 2214872 ~ 2220701 (-) True AMCG00018122
AMCG00018123 mRNA downstream 234144 2203377 ~ 2209563 (-) True AMCG00018123
AMCG00018117 mRNA downstream 281325 2160400 ~ 2162382 (-) True AMCG00018117
AMCG00018136 mRNA upstream 17006 2466703 ~ 2476255 (-) True AMCG00018136
AMCG00018140 mRNA upstream 43370 2493067 ~ 2497418 (-) True AMCG00018140
AMCG00018139 mRNA upstream 65620 2515317 ~ 2517457 (-) True AMCG00018139
AMCG00018141 mRNA upstream 116594 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018142 mRNA upstream 186804 2636501 ~ 2647717 (-) True AMCG00018142
TU143313 other downstream 154845 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 376123 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 437071 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1516968 923507 ~ 926739 (-) False AMCG00018077
TU143456 other upstream 159448 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1611114 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2136365 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2196880 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2836689 5286386 ~ 5287873 (-) True G115174

Expression Profile