RNA id: AMCG00018138


Basic Information

Item Value
RNA id AMCG00018138
length 1787
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00018138
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2574395 ~ 2579357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACCGTGTGCCCAGGCAACGCACAGCGCAGACACAGACCCGCACAGCGCAGACACAGACCCGCACAGCGCAGACACAGACCCGCACAGACCCGCACAGCCCGCAAACATCAGCGCGGTGACTTTGTAACACATTGGTCTGCAATCAGAAACAATAGCCATGTCGGCTCAGATGTTAGTTTCTAGACCCAAATTCGACACCAGAGCGGTCGCCCAGCAGGAGCTGCCCCCGAAGTCCAACCAGATCCAAGTGAACGGGGGTCTGCACTCGTCCTCCGGGCTGACCACCGCAGGGTACCGGACAGCCAAGTACACCCCGGACGAGTGGCACCGGAACAACCACTCCATCTTCGGCCAGGCTTTCGGGGACCGGGCCAAGGCGCACAGCATCCGACAGGAGGCCAAGCAGCTGTGCGGCGGCACGGAGGCCGGCTCGCTGCGGGCGCAGGCGCAGGGGACGCGGCTGCTGGGGACGCGGCTGCAGGACGTGCACTTCTGGCGCTCCGAGCTGCAGCGGCACGTCGAGGCGCTCACGGCGGAGACGGAGCTGCTGCTGGGCCAGAAGCGGCGGCTGGAGAGAGCCCGGGACAGCGCGGAGATCCCCCTGGCCATCGCCACCGATAACCTGGCCTGCCGGGAGCGGCGGCTGGGGCCGGACCTGGTCAAGGACGGGGTGGAGGTGGAGCTGCTCCGGGAGGTGGAGCTCATTCGAAGTGTTCAGGAGCTGCTGAAAAGGACTTTAGATCAGGCCATTGATCAGATAAGAGCAAACAGAGATGTCAAGCAGACCCTGGAGCTGGACTGGTCGGACAAGCACGAGGCCTACACCATGGATGACCAGTGCGGCAGATACAACAACCTGAGCACCGACACGCAGTTCCACTTCAACTCCACCAAGTTCCAGGAGAGGTACGACCCCCCAGGGCCACACAGACCCGGATACACCAGGAAGGGCGAGGGCGAGGCCCCCGGTCAACGAAAACTGAGCTTTGAGTGCCATTTTAAGAATAACGTGTCCACCCATGAAAGCTGGACTAAGTTCACCCGGGACAACATCACCCTGTCTGAGCGCGAGGAGAGGGCTTCTCTGGACCTCCGCGCCCTGATTGACCAGGTGCTGCAGGACACGGCAGAGGACCTGCGCACTCAGTGCGCCGCGGTGGACCGGGCCTTCTCCCAGCGCTGCGATGACATGAACGAGGCCAAGGTCCGACTGGAACAGCACCTCAACCAGGTTCTGGAGCAGATAGGCAGCCAGGAGAGGAACATCGCGGCTCTAGAGCGGGCCATCAGGGATAAAGAGGCCCCAATGAAAGCGGCTCAGACCCGGCTGTACCAGAGGTCATACCGGCCCAACATGGAGCTCTGCCAAGACACTGCGCAGTTCAGGCTGGTCAACGAGGTGGGAGAGATCACAGAGTCCATCGAGGCCCTGAAGAAGAAGCTGGAGGAGGGCCGCCAGTCTCTGAGAGACATGGAGGACACCCGCATGACCCTGCAGAAGGAGATCGGCTACAAGACCAACAGCCTCTTCATCGACCGGGACAAATGCACGACCCACCGCACGTCCTACCCCACCATCATCAGGCTGACTGGGTACTGAGGCCGCCCCCCCCTGCCTCAGGAGGCGCCCGGTCCGCAGTCACCCTGAGGTTTTGAATGTTGGTTGGCTCCACGGTCACAGAGTTGAGCTgagattgtttttctctctctccttttcatGTAGATGTTAATTAAAAGGGTGTTGGTCATTAATACgggcaaaataaacaaacaaacatacctGCA

Function

GO: NA

KEGG:

id description
K18631 TEKT4; tektin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143435 lncRNA upstream 528 2573637 ~ 2573867 (+) True G114531
TU143420 lncRNA upstream 5457 2491313 ~ 2568938 (+) False G114518
TU143378 lncRNA upstream 156599 2416807 ~ 2417796 (+) True G114485
TU143377 lncRNA upstream 161606 2410477 ~ 2412789 (+) True G114484
TU143296 lncRNA upstream 307644 2262676 ~ 2266751 (+) False AMCG00018119
TU143455 lncRNA downstream 29786 2609143 ~ 2609412 (+) True G114548
TU143461 lncRNA downstream 89103 2668460 ~ 2668661 (+) True G114553
TU143463 lncRNA downstream 91550 2670907 ~ 2742686 (+) True G114555
TU143537 lncRNA downstream 264948 2844305 ~ 2845453 (+) True G114613
TU143550 lncRNA downstream 285631 2864988 ~ 2867237 (+) True G114624
AMCG00018132 mRNA upstream 109637 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018130 mRNA upstream 130867 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018133 mRNA upstream 140739 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018131 mRNA upstream 141413 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018128 mRNA upstream 172986 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018146 mRNA downstream 119471 2698828 ~ 2717437 (+) True AMCG00018146
AMCG00018145 mRNA downstream 138145 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018144 mRNA downstream 203705 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018149 mRNA downstream 209016 2788373 ~ 2793873 (+) True AMCG00018149
AMCG00018150 mRNA downstream 235090 2814447 ~ 2827770 (+) True AMCG00018150
TU143421 other upstream 6860 2566084 ~ 2567535 (+) True G114518
TU143173 other upstream 594016 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 594016 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 594016 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 594016 1979046 ~ 1980379 (+) False AMCG00018106
TU143458 other downstream 61489 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1612360 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2022133 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2182161 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 3370106 5949463 ~ 5951017 (+) True G115299

Expression Profile