RNA id: AMCG00018139


Basic Information

Item Value
RNA id AMCG00018139
length 996
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00018139
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2515317 ~ 2517457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGGCACTTCACAGCAAGCAAGCTTAGAATTTCCCATCCTGCCCCTGAGCTCTCCCAACATCCTCACCGTGATCATCCTGTCCCAGCTGGTCTCCCGGAGACAGAAGTCGTCCTACAATTACCTGCTGGCCCTGGCGGCTGCCGACATCCTGGTCCTGTTCCTCATCGTGTTCGTGGACTTCCTCCTGGAGGACTTCATCCTGAGCCGTCCGCTGCCGCCCTCTCTGAACAAGGCCATGCAGGTACTGGAGTTCTCCTCCATCCACACGTCCATCTGGATCACCGTGCCGCTCACCATCGACCGGTACATCGCCGTCTGCCACCCTCTCAAGTACCACACCGTCTCCTACCCGGCCCGCACCCGCAAGGTCATCGTCACAGTCTACCTCACCTGCCTGCTGACTAGCGCCCCATACTACTGGTGGCCGGATCTGTGGCAGGAGAACTACCGCAACAGCATGGCCGACCAGGTGCTGGTGTGGGCACACTGTGTGACGGTCTACCTGGTGCCCTGCTCCATCTTCTTTGTCCTCAACTCCATCATCATCCACAAGCTGCGGCGCCGGCGGAGCTGCTTCAGGCTGCGGGGCTACTCCACGGGCAAGACCACTGCCATCCTCCTGACCATCACCACCATCTTCGCCATCCTGTGGGCGCCCCGCGTGGTCATGATCCTCTACCACCTGTATGTGTCACCAGTCGGCTCGGCCCGCACGGTGCACCTGGTCACAGACGTGGCCAACATGCTGGCGCTGCTCAACACCGGCATCAACTTCTTCCTATACTGCTTCATCAGCAAGCGGTTCCGGGGCATGGCAGCCGCGATGCTACGCGCCTTCTTCCGTTGTCAGAAGCAGCCCGTCCAGTTCTACACCAACCACAACTTCTCCATCACCAGCAGCCCCTGGATCTCCCCGGCCAACTCCCACTGCATCAAGATGCTGGTGTACCAGTACGACAAGAACGGCAAGCCCGTGCGCATTTCCTCCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08428 GPR139; G protein-coupled receptor 139

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143345 lncRNA downstream 139582 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 529596 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 531168 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 636942 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 668546 1751896 ~ 1846771 (-) True G114304
TU143460 lncRNA upstream 119044 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 151003 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 478578 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 559584 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 622638 3140095 ~ 3141310 (-) True G114720
AMCG00018140 mRNA downstream 17899 2493067 ~ 2497418 (-) True AMCG00018140
AMCG00018136 mRNA downstream 39062 2466703 ~ 2476255 (-) True AMCG00018136
AMCG00018134 mRNA downstream 65620 2443707 ~ 2449697 (-) True AMCG00018134
AMCG00018135 mRNA downstream 95282 2411018 ~ 2420035 (-) True AMCG00018135
AMCG00018137 mRNA downstream 106522 2402298 ~ 2408795 (-) True AMCG00018137
AMCG00018141 mRNA upstream 48834 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018142 mRNA upstream 119044 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018143 mRNA upstream 156040 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018147 mRNA upstream 234492 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018151 mRNA upstream 314599 2832056 ~ 2838291 (-) True AMCG00018151
TU143313 other downstream 226455 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 447733 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 508681 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1588578 923507 ~ 926739 (-) False AMCG00018077
TU143456 other upstream 91688 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1543354 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2068605 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2129120 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2768929 5286386 ~ 5287873 (-) True G115174

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000331_00039755_00051412.mRNA True 2538 mRNA 0.49 4 CI01000331 38888 ~ 51802 (-)