RNA id: AMCG00018143


Basic Information

Item Value
RNA id AMCG00018143
length 855
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00018143
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2673497 ~ 2674351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGATCGTGGTGATGGATTACCAGGTCGTGAGGGCACCGGTGGGCATCGTGCGCTTCCTGGAGATTGTCCTGTCCTGCGTGGCGTTCAGCCTGGTGGCTCATGTGGGCCATGTCGGCGGTTCATTCTGGACCTGGTGCATGTTCTCCTGGTGCTTCTGCTTCACTGTCACAGTGCTGATCATCCTGCTGGAGTTCACTGGCCTCTCCACCAAAGTCCCAATCTCCTGGGATGACTTCACCACCGCCTTCGCCATGCTGGCTACGCTCATGGTGCTCACGGCCTCTATCATCTACCCATACTTCTTCGCCTGCTCCAAATGCTCCTACCAGATAGCGGCCACAGTCATATCCATCCTCTGCTTCCTGACCTACGCCATTGAGGTGGGGCTGACGAGGGCCAAGCCCGGCGAGATCAGCGGCTTTCTCTCCACCGTGCCGGGGCTCCTGAAGGTCCTGGAGGCGTTCGTGGCCTGCATCATCTTCATATCCTTGTCCGGTATCTACAACGAGCCCGGGCTGCAGTGGTGTGTGGCCGTGTACTCGCTGTGCTTCATCTTTGCActgatcatcatcatcttcaccATCGGCCGCATCATCTCGctcttccccttccccttcgACAAGGTGCTGACCGGATACAACGTCCTGGCTGTGCTCATGTACATCACTGCCGCCGTGATCTGGCCCTATTACAGCTTTAAAGATAACCCACGACCCTCCAAATGTTCACAGGTTCACTGTGACTGGGACAGCCTGGTAGTGGTCACCATCATGACCATCATCAACCTAATCGTCTACATTGTGGACACCATCTACTCTGTGCGGCTCGTCTTCTTCGTTTCCCCAGCGTAG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 4836 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 25686 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 297762 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 687776 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 689348 1983652 ~ 1984149 (-) True G114363
TU143599 lncRNA upstream 321684 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 402690 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 465744 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 726081 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 1233668 3908019 ~ 3910399 (-) True G114785
AMCG00018142 mRNA downstream 25780 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018141 mRNA downstream 101549 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018139 mRNA downstream 156040 2515317 ~ 2517457 (-) True AMCG00018139
AMCG00018140 mRNA downstream 176079 2493067 ~ 2497418 (-) True AMCG00018140
AMCG00018136 mRNA downstream 197242 2466703 ~ 2476255 (-) True AMCG00018136
AMCG00018147 mRNA upstream 77598 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018151 mRNA upstream 157705 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018152 mRNA upstream 165411 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018153 mRNA upstream 177078 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018154 mRNA upstream 197102 2871453 ~ 2875461 (-) True AMCG00018154
TU143456 other downstream 64018 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 384635 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 605913 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 666861 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 1746758 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1386460 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1911711 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1972226 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2612035 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2625756 5300107 ~ 5304429 (-) True G115183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_02147391_02148242.mRNA True 1044 mRNA 0.48 1 CI01000113 2147391 ~ 2148434 (+)