RNA id: AMCG00018146


Basic Information

Item Value
RNA id AMCG00018146
length 2016
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00018146
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2698828 ~ 2717437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGTCCGCACTGTTGTCCACCATTGTCCCAAGTTTGGCCGAGCCGCTCTCTGGGTACACAGATGCTTTTCTCATCAAGGCTCTGGCGCATAGCCACGCCATGACAGAGCGCCCGAGAGATGTTTTTGCCTCTGCGTCGCTTGCTCAGATCTCAGTCGGAAACTTGAGTTTCAATCCATTTGTCTGTGATTGCAAACTGTTCCGATTAGTCAACTGGATTGCTGACCAGGTGGTGGAGGTGCACCAGGCCGAGTCGATGCAATGTGCCGAACCGCCGAAGGTCAAGAATCTGCCGCTCCTCAACGCCAGTCTGTCCAGTGTGATGTGCGGTGAGTTCTGGCGGTCGGGATGTTTTAAAGACTGTCATCAAAGGCTGAATTATGCCGCCTGCCTGTTGGACAAGAACACAGGGGTGAACGAGCTCGTCATTTTCACCGCATCAACTCCGGGCAACTACAACCACGACACCTGCAACAACCTCTGCTTCACCGCGGGGCAGCTGTACGGGGGCCTGGGCTCCAAGTCGGAGTGCCTCTGCAGCACCAACTCGGAGCCCAACTTCATCAGCGAGTCCCAGTGCTCGGCGGCCTGTGCGGACAGCCAGGTCATGAAGGTGTGTGGCTGGACGGTGGCCAATGAGGTCTTCTTGGTGGACTTCTCCGCCTCCTTCAGCCCGCTGCGGACCTTCAGCGTCCACGAAGAGGCCACACTCACCATCAGTATTTCTGTTATTGTAAGCACTTTATCGTGGGACTTTGGGGATCTGACCCCGTGGCTCAACACCACGGTGCCATCGGCCTCTCACAAGTACGCCCTGCCCGGGAAGTACCGGATCAAGGTGACACTCTGGGCAGGAAACAAGGACATCTCCATCCAGACCGACGTGGACGTAGTCATTCCCGGGCACCTGCAGCTGGAGTGTCCTGCCACCGTAACCACCAACAGCAGCGTCAATGTAAGCTTGACCAACTTGGACGGGACGGACGTGGACGTGGATTGGCGAATCATGTCCAGTGGCCAAGAAACTGCCAGAGAGCATCAGCACAGCCAGAAACAAATAAGACTCCTAAATGACGCGTGCTGTCATTGCCTTTCAGCACTGCCTTACTGCCCCCCCGGTGGCATTATGGACCCAGAGAGCAGCCGCTGTTTCAGAGTCTTCTGGGCCGAGTGCACCTGGCAGGAGGCTCGCCGGCAGTGCACCCCTCACGGAGACCTGGCTGTGCCGAACACCCCCCACCTTCACAGCGCCCTAATCCTCCACTTAGGAAACGACGCTGGCAGTCCTGGGTTCCTGCACTGGATGGATGGCTCAGTTCTGGAGACCAGCGAGGACCGGACGAGGGAGAGAGCATCAGTCTCGCCTGGAAACACCTGCGTCTTTCTCAACTCCACGGGCCAGCACTACACCCAGCCCTGCTCCACGAAGAGAGGCTTCGTCTGTGAATTCAGACCACAAGCCAGGATACCCGATGCGGCCGTGTTCATGGAAGGCTGTGCCGTTTTCAACGCACACAGGCCCTTCAAAACCGCAGTGACGGTGGCTTCCCTTGCTGAGCCAGTGAGGTTGGTGGAGCTCCTGATGTTCCCCAGCCTGTGGTTCAAACACGAAGGACATGTGTCGGCTCTGGAGCTCATTGTGAAGGACATCAGCAGCTCGGTCCAGGTCCGGTTCCAGGTGTACAGACCACACTGCAGGCAACTGGGCCTCCACCTCCTGCTGCCAGGGTGTGAGGATCTCTGCTCGCCCATTGCCGTGTGCCAGGGAGAGCAGGTGAACAGGACGATCAGCGCCTGCGTGGCACGGCAGCAGTGGTGCCCATACCAGTCCCGGTGTTTGCCCCTCGGCAGCCCCTGTCCCTCTAGCTCCTGTTCGAACTGCTCTGGGGCTGATTCTCTCCCCCGGGATGTCCTCCAGCCTGAATACAGCCTGGTCAACGAGGTGCTGTTCACCCTGCCGCCGGCCCCATCCACACATTACCTGGTAAGCACATTAGAGTCTTTACCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143461 lncRNA upstream 30167 2668460 ~ 2668661 (+) True G114553
TU143455 lncRNA upstream 89416 2609143 ~ 2609412 (+) True G114548
TU143435 lncRNA upstream 124961 2573637 ~ 2573867 (+) True G114531
TU143420 lncRNA upstream 129890 2491313 ~ 2568938 (+) False G114518
TU143378 lncRNA upstream 281032 2416807 ~ 2417796 (+) True G114485
TU143537 lncRNA downstream 126868 2844305 ~ 2845453 (+) True G114613
TU143550 lncRNA downstream 147551 2864988 ~ 2867237 (+) True G114624
TU143562 lncRNA downstream 164995 2882432 ~ 2882968 (+) True G114629
TU143616 lncRNA downstream 384729 3102166 ~ 3103170 (+) True G114674
TU143647 lncRNA downstream 450726 3168163 ~ 3168982 (+) True G114699
AMCG00018138 mRNA upstream 119471 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018132 mRNA upstream 234070 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018130 mRNA upstream 255300 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018133 mRNA upstream 265172 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018131 mRNA upstream 265846 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018145 mRNA downstream 65 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018144 mRNA downstream 65625 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018149 mRNA downstream 70936 2788373 ~ 2793873 (+) True AMCG00018149
AMCG00018150 mRNA downstream 97010 2814447 ~ 2827770 (+) True AMCG00018150
AMCG00018148 mRNA downstream 162131 2879568 ~ 2881846 (+) True AMCG00018148
TU143458 other upstream 51054 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 131293 2566084 ~ 2567535 (+) True G114518
TU143173 other upstream 718449 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1474280 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1884053 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2044081 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 3232026 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 5176190 7893627 ~ 7894449 (+) True G115590

Expression Profile