RNA id: AMCG00018147


Basic Information

Item Value
RNA id AMCG00018147
length 7187
RNA type mRNA
GC content 0.57
exon number 41
gene id AMCG00018147
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2751949 ~ 2783012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTCTCCAGCGCAGTGTGACTTCCTGCCGGAGCgacaggggagggggggcttGTCAAGTGATAGCTGGATttggagaaaattaaaaacaagctgcTGATATTAATAAATGACACGATAAGCGTTGATCGCTCGCCCTTGATCGTCATTTTTAATGATCACGTCAGCATATCTGTAGAAGACCAGGAAGCCCCCAGCCTTGTCTGCTCTTCGACCTCCAGGATGAATAAACAGCAGAGCAAGGAATCGCTGAAGGACAAGGTCAAAGGGATTTTTGGGCTGGGGCCGCCGCGCCCGAACACCAAGCAGACGGAGAGCAAACCCTCCGAGTTCATGGTCACCCATGACATTCTGAGGgaCCTCAGCATAGAGTGTGGTATAAACAACCGAATCCGGGTGATCAACCATGTCTGTGATCTTGCGAAGTCCAAGAAGTTCGAGGAGAATGCTGTGGAGGCTCTGTGGAAAACGGTGGCAGACATGCTGCAGCCGGAGCAGCCACCAGAGGCCAGACACGCAGTCCTGCAGCTGTTGAGAGCCATCATACAGGGCCAGGGTGAAAGGCTGGGGCCGCTGCGTGCATATTTCTTCAACATCATCAGGGAGTACCAGCCCTACAAAGAAGACCTGCATGAGAGGCTTGAGGTCTTCAAGGCTCTGACCGAGAACGGCAAGGACATCATGTATTTGGAGGAGGACATTGCCCGCTTTGTGTTGCTGTGGATGGATGTGGGCCTGACTGCAGACTTCCTCCAAGTGCTGGTGAACCTGGTCAAATTCAACAGCTGCTACCTGGACCAGAATGTCTCCCAGATGGTCGATAAAATATGCCTGTTGTGCAACAGGACAACGTCATCAACAGATATAGAGGTCTCTCTCCAAGTGCTGGATGCGGTCGTCTGCTACAACTGCCTCCCCTCCAACTCGCTGCCCGTCTTCATCATCACACTGTGCCGCACTGTCAACGTCAAGGAGTTCTGTGaatcctgctggaagCTCATGCGTAAAGTCCTGGGGACTCACCTGGGACACAGTGCCATCTACACCATGTGCCGCATCATGGAGGATAGAGCGTACATGGAAGACGCTGCCCTGTTGCGGGGGGCCGTGTTCTTCGCCATGACGTCCGCCAATGAGGTGGTGTCATACGAAATCGTGCTCTCCATCACACGGCTGATCAAGAAGTATGGCAAGGACCTGCAGGTGGTCACCTGGGACATCCTCCTCAACATCATCGAGAGGTTGCTCCAGCAGATCCAGACCATCGGGAGTCACGAGCTGAAGTCGATCGTCCATGAGCTGCTGACCACAGTGGAAGAGCTGTACGAGCAGAACGGATACCACGGCTCCTGCGACCGCTTCTTTGGCCTCCTCGAAAAGTATTCAGATAAACGCCCGGAGTCCTCTGTCCTGACGCTGGTCTCCTACCGGGCTCACTCCATCCAACCGGCCAAAGACGGCTGGATCCAGAACCTGCAGAAGCTGATGGAGAAGTTCTTCAGGAATGAAACCAGGAGTGCGATCCGGATCAAAGTCCTCGATGTCCTCTCCTTCGTTCTCAGCACGAACCGCCAGCTGTATGAGGAGGAGCTGATCGAGTCGGTGGTGATCCCCCAGCTCAGTCAGATCGCAGAGGACAAGGACCTGCACGTGCGCAAGCTGGCCACGCAGCTGCTGGTGGACCTGGCCGAGGGCTGCCACTCCCACCACTTCGGTAGCCTGCTGGACATCATCGAGAAGGTGGTGAGCCGCTCCTTGTCGTGTCCAGTCACCGGGGAGGGGGTAGAGAGGGAGCTGCCATCGGAGTCGCCCATGGAGGACGTGAAGACAGCCATCCTTGGGCTGCTGGAGATCCTGCAGgTGTTTGAATTCCTGCTCCTGGTCCGCGCCGACTCCCTCCATCGCCTAGGCGTCCCCAACAAAGATGGTGTCCTGCGCTTCAGCCCGTATTGCCACTGTGACATGGGCGAGCCGGAGAAGAGAGGCAGTGAGAAGAAGCCCCCTGGGACGGTGTCGCCCCCCGCAGGCAGCCCCGCCCCCGCCGCCGTGCCCTCCTCCCTCCGCACCGGCTACCTACCCTACTCCCTGGCCTTCTCCGTGCTGCTGCAGTGCCTGAAGCTGGAGACGGACTGGAAGGTTCTGAAGCTGGTCTTGGATAAGATGCCCTCCTCCCTGCAGAACAAAGTCCTCATCCTGACGTCCCCCTGCAGCATCGACCAGCTCTGCTCCACCCTGTGCGCCATGGTGACCGACCGGCTGATCTCTGAGCGGTTACGCAGGACCCCGGATGGCTTCTCGCGCACGGATGTCCAGCTGGCCGTGGTCCCAGTCCTCACCGCCATCACCTCTTACCACAACTACCTGGAGCAGGCCAGACAGCGGGAGCTGGTGCAGTGCCTGGAGACGGGCCTGATCTACCGCTGTGCCAAGCAGTGTGTAGTGGCTCTGACCATGTGCACCGTGGAGATGCCCGACATCATGATCAAGCTGCTGCCCGCGCTCATCGTGAAGCTCACACACATCTCTGCCACTGTGACCATGGCGTCGCCCATGCTGGAATTCCTGTCCACTCTGGTCAGACTCCCGCACCTGTATGCCAATTTCGTGGCGGAGCAGTACGTCAGTGTGTTCGCTATCTCTCTCCCCTACACCAACCCTTCAAAGTTTAACCAGTACATCGTGTCTCTGGCACACCATGTGATTGCCATGTGGTTTATCCGCTGTCGGCTCACGTTTCGGAAGGACTTTGTGCAATATATTACAAAGGGTTTGCGATCCAACGCCCTTCTGCCCTTCGATGACACGCACGAGCAGAGCAGCTTTCGCGCTCGCAGCACCAGCCTGAACGAGCGGCCGAAGAGTCTGCGGACCGCCAAAGTCACAAAACAAGGCTTGAGTAACAACTCCCCAGTTAAAGAGCTGAAAGATCTCTCGGCAATGGACGCCTTCCGCTCGCGAAGCATCAGTGTGTCCGAGCACGCGGTGCGCAGGATGCAGACCTCCATCACCACCAGCAGTCTGGGCTCGGCGGACGAGAGCTCCGTGGCACAGGCGGACGACAGCCTGAAGACCGTCCACCTGGAGCTCACTGAGACCTGCCTGGATATGATGGCTCGCTACGTCTTCTCCAACTTCTCCGCGCTGCCCAAGAGGTCCCCCATTGCTGAGTTCCTGCTGGCAGGAGGGAGAAGCATGACCTGGCTGGTGGGAAACAAGCTGGTCACCATCACGACCAGTGGCGGGGCCAGGACGCAGTCTCTGTTCGGCCTCGACGGCGTGGAGCGGCACAGCGGCGGGGAGCTCACCAGATCGGACCCCTCTCTGCACACGAGACTCACCAAAGAGGCGCCGGCAAAGCTGGAGTCCCAACCCAGCCAGCAGGTGGGCCGCGCCACGCGCATCAGAGTGCGGTCCATGTCGGGTGGCCACGCCCTTCGTGCTGGCAGTGCCCAGAGCCTGAGCCCCCTGGTGTCCCCCTCAGAGGGTGAGTTCTGCGgccccatctctccctcccctcaGGGCCTGGATAGCGCGGGTGGGTTCCGCTCCGAGCCCCCGTCTGCCCAGCCCCCATCCCAGAAGGACAAGACCAACCTGGTGGACTTCGTTCCCATGCTGACGCAGGGCTGGGCAGAGATCTTCATCCGCAGACCTTCAGGCAACACCAGCTGGCTGATGTGCCTGGAGAACCCCCCCAGCCCCTTCTCCTCGGAGATCGGCAACATGCCCCTGCAGGAGATCTCCAGCATCCTGATGGCCATGGATGGGGTCAAGGAGCCCAGGGTCCCCGAGGCTCCCAGGTCCCACCCCGAGCCGGACCCGGGCCTGGTATATGGGCCGCAGAAACCCTCCTTGATCCAGCGCTCCAACACAGAGTCGGTCATGGTGCTGGAGGAGGGCGGCCGAGGGAAACCCGGAGATTCCCCCGTGGAGTCGCCGGAGAGCGAGGAGTTCGAGGCAGTGCCCCCGGAGCCCCTCTTCATCAGCGGAGACAAGTTCGGCAAACCCCAGGGGGCCTACAGCAGGtcctcctccagctccagccAGGAGGAGGACAAGTCCACACCGCTGGAGGAGGTGGGCGCCATCCCCATCGAGAGAGGCGGCACGCCGGCGCCCAAACCCGAGGAGGACCTCTCCTTCCAGGGCACCCAGACCCTCAACAAGTCCAGCTCCTCCCCCGAGCTGCAGACGTTGCAGGAGGCCTTCGCGGAGGCACCCGGCGGGGAGCAGGGCGGCCAGGGCAGGGCGGCGATGGATGGGAAGCTGGAGCTCGAGGTGGAGCCTGCGGCCGCGGAGGTTAATGGGCGTGTGGAagcggcagcagcaggaggaggtgTAGGACCGGCAGCTGGAGGTCCAGGACCCATTCCCGCCCCCGGCCCCGCTGTGCCCAGCTCCATGTCAAAGATGAAGTTGGAGTTCCCGGCCCCCCAGCCCTCACCCCTCTCCCCCAGCGGCCACCGGCCTCGCGGACACACGATCTCGGAGTCGGCCCCCTCGCGCCGGGAGCGGAAGATGGAGCGAGACCACTACCACAACAGAGGGGCCACCTCCAACTCGGAGAAGTCCTCTGGCCTGTGTCCCAGCTTCGTGTTCCTCCAGCTCTACCATTCGCCATTCTTCGGGAACGAGTCCAACAAGCCCCTGCTGCTGCCCAAGTCCCAGCTCATCGACCGAGCTGTCAAAGTCCTGGATCAGATGCCTCCGTATGACACGCACAAGATCGGAGTGGTGTTCGTCGGAGCGGGGCAGGTGAACAACGAGGTCTCCATCCTGTCCAACGAGTATGGGTCCAACCGCTACGCCCAGTTCCTCACCGGCCTGGGCAAGCTGATCCACCTCAAGGACTGCGACCCCGACCAGATCTTCCTCGGGGGGCTGGACCAGTACGGCGACGACGGGGAGTTCACCTACTGCTGGCACGACGACATCATGCAGGCCATCTTTCACATCGCCACCCTGATGCCCAACCGGGAGTCGGATAAGGGCTGCTGCAACAAGAAGAGACACATCGGTAACGACTTTGTCATCGTGGTGTACAACGACTCGGGGGAGGACTACAAGCTGGGCACCATCAAGGGCCAGTTCAACTTTGTTGAAGTCATCGTCAAGCCATTGGACTACGAGAGCAATCTGGTGACCCTGCAGTGTCGCAAAGGGACGGTGCATTTTAATCCGTACAGTTTTAAGCCCGTACGGTACGTGATGAGTGAAATGGCGTACGCATatcTAGAAGGTCTTGTTGATACCAGTGTGGCCAAAATCGTGTCGGATAAGAACCTCCCTTTGTTGGTGAGACAGATGGCTCTGCACGCGAATATGGCTTCTCTGGTCCACCAATACCGGTCCAACCCCTCCGACGCCTACGCCTCCAAGTGGCTAGCCAGGCTGCGCCACATCAAGAGGATTCGAACGCGGGCTCAGGAAGAGATCCAGTCCCGGCCCAGCCCAGGGGGCATCTCTCTCACGCAGATGCACGGCTCGGTGCAGAACAAGAGCTCCTACCAGCAGCCTGGGTCCTCAGCCCCCGACGGCGGCCAGCGGAAGCGCCTGGTCTCCACCGTGGATGACTTCACCGACTTCGTGTGAGAGCCCGAGAGACCGCACCCCTTCCCCCACTTCTCTCATCCTTTTTCGTCAGGTGGTGATGcagagaggaggaaggagagggacACACTCGCAACACACTCGACAGTTGCATCGTTTCCAGATCAGACCCGACTCCCCTCCGGCGCACACGACCTCCGCCCGCCCCCGATCCGCTCACCGCGCACGTTCCCTTCAAGAGGCTCAGATCCTCACTGCCTGGCGGGGCTTGTAATTTGAAGAGTCGCCAAGCTGTCACTATCTCAGCCTCGCTATTTTCTCTCTGCGCCGCTCTGCTTGCGGTCAAGTAGACTTCGCCTCGCAGAGAGCCTTCATTCGGAAGAGGTGGAGATGCGATTCACCACAGGAAACGTTTTAGAAAAGTAGATCTGAGACTCTTCTCCCTCCCGTAAGATGTGCCAAAAGGAATAAAATTGTCACTCTCTCGTACTTGTAATCCCCTGTAATTTTTTTCAGGCAATCTCCTTCCAGTGAAAGCCTGCAAGAGCGATTTTGCTAGTTTAGCACAAACCCGACTTTGGCTCTGTGACAAAACATCCTTTACTGCAGCTTTGATGTTAATCTCTCCCAAAACTTCAGTATTAAAGAAAGACTGAGAGCAAATACAATAAAGGAATAACGATAACCATAAAAACAATTCTTCTTTAGCAATAATAGGAGTCATCTTTAATCTAGGCCTCGATCccttgcttttttatttcccctctcAGGATTTAGAAGCCAGAAAGTCAAGTTAGATCGAAATGTATGTCCACACTTAACTCTTACCTTCAGAGACGTGTGCGTGTTCGGTAATGTGATCTGGAGACACAGATATTCGTTCTGAGAACTCTTATGGTACAGTAGTTTTTCAATCCcacagacagggacagacaTTGCCTGGTAACTGATGCTATTGATTAGAGAGGCTTTGTTGCGATGGCCGTATTCTTCGGTGTGAACAGCGGCTGCCTGAGCTGAAATAACAGCCTGTGTGTGTTAGTTCAGCATAGCTCTCTTTGGAAAAGTGCTAATAATGAACACACAtctgatttaaacaaaacaaaacaaacaaaaacaaaaaatcgaCAGCCATACGGTCACATGTAATTCCGGACTGCCAAAATGTCCTGAACAGTTACACGGGGTTATGGAAACGGGCCTGTATTGTGACCGTGGTGGAGTGGTGGTGGGTCCGACATTTCAGTGGGTTTATTTGGGGGTGGTGGTGAGAGATGTATCGCTCGTCTCCTGGGAGGTGGAAGCTGACTCGACTGCACATCTTTTTCCTCTTTCAGCAGCACGTCCATGAAATGATCTGTTCCTAATTTCACAGGCACTAGCCGGAGTTTCAGATGCCCACCTGGAGACCGGTCACTTCGTCCTCGGGGGGGGTCCTGTTGTACAGCCCCCCGTGGCGAAGGTGCCGGCCCGGTCTTTCGTAAAAAAACGACTAACCCAGAACCCGGATCGCAGCGCAAGTTGTACCCGGCTGTGCAATACTTTCAGGGGAGAGATCCTCACAACTGATTTGGGGGGGATTATATGTAAATTTGTAAAtgaagaaatgcaaattaaaagtgtgtgtgtgaaatgaa

Function

GO: NA

KEGG:

id description
K07207 TSC2; tuberous sclerosis 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 83288 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 104138 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 376214 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 766228 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 767800 1983652 ~ 1984149 (-) True G114363
TU143599 lncRNA upstream 213023 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 294029 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 357083 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 617420 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 1125007 3908019 ~ 3910399 (-) True G114785
AMCG00018143 mRNA downstream 77598 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018142 mRNA downstream 104232 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018141 mRNA downstream 180001 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018139 mRNA downstream 234492 2515317 ~ 2517457 (-) True AMCG00018139
AMCG00018140 mRNA downstream 254531 2493067 ~ 2497418 (-) True AMCG00018140
AMCG00018151 mRNA upstream 49044 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018152 mRNA upstream 56750 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018153 mRNA upstream 68417 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018154 mRNA upstream 88441 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018157 mRNA upstream 99476 2882488 ~ 2908429 (-) True AMCG00018157
TU143456 other downstream 142470 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 463087 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 684365 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 745313 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 1825210 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1277799 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1803050 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1863565 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2503374 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2517095 5300107 ~ 5304429 (-) True G115183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001188 False 6274 mRNA 0.53 38 NC_007112.7 54198893 ~ 54274861 (+)
grasscarp (Ctenopharyngodon idella) CI01000302_01279086_01281732.mRNA True 664 mRNA 0.54 6 CI01000302 1279086 ~ 1281732 (+)