RNA id: AMCG00018149



Basic Information


Item Value
RNA id AMCG00018149
length 561
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00018149
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2788373 ~ 2793873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGATATCGGCATCGACCTCAGGGGTGGACATGGCCCAAGAGCTGAAGCCGAGACTGTGCGTCATGACGAAAGGGGAGACCGGGTATGGGTTTCATTTGCACGGAGAGAAGGGGAAAAGTGGCCAGTATATCAGGAAGGTGGAGGCGGGCTCATCCGCGGAGGCTGCCGAGCTCCGCGCCGGGGACCGTGTGGTGGAGGTGAACGgggaaaatgtggaaaaagaaacGCATCACCAAGTGGTGCAGAGAATCAAGGCCCTGGAAAACGAGACTCGCCTGCTGGTGGTGGACAGAGAGACGGACGAGTATCTGAAGAGCCTGAGACTGACCTGCACTGAGGAGATGGCACGCACGGGCATTGTACTGACCACCCCTGGGCCCACACCACAGCCCGCCAAGAGGGAGAATGGCTTAAAGCAGCCAGTGATGCTCAGCAGTGAGGAGCACAAGCGGGTGCCCAAGAGAACGCCCTCGCAGAATGTCAAAAAGGCAGCGACGCCACTCAAGGTCAGCCCAGGAAGCACGTCTGAGGGCCTCCGGGCTTTGTGTCTGAGTGGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143463 lncRNA upstream 45687 2670907 ~ 2742686 (+) True G114555
TU143461 lncRNA upstream 119712 2668460 ~ 2668661 (+) True G114553
TU143455 lncRNA upstream 178961 2609143 ~ 2609412 (+) True G114548
TU143435 lncRNA upstream 214506 2573637 ~ 2573867 (+) True G114531
TU143420 lncRNA upstream 219435 2491313 ~ 2568938 (+) False G114518
TU143537 lncRNA downstream 50432 2844305 ~ 2845453 (+) True G114613
TU143550 lncRNA downstream 71115 2864988 ~ 2867237 (+) True G114624
TU143562 lncRNA downstream 88559 2882432 ~ 2882968 (+) True G114629
TU143616 lncRNA downstream 308293 3102166 ~ 3103170 (+) True G114674
TU143647 lncRNA downstream 374290 3168163 ~ 3168982 (+) True G114699
AMCG00018144 mRNA upstream 1851 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018145 mRNA upstream 40980 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018146 mRNA upstream 70936 2698828 ~ 2717437 (+) True AMCG00018146
AMCG00018138 mRNA upstream 209016 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018132 mRNA upstream 323615 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018150 mRNA downstream 20574 2814447 ~ 2827770 (+) True AMCG00018150
AMCG00018148 mRNA downstream 85695 2879568 ~ 2881846 (+) True AMCG00018148
AMCG00018155 mRNA downstream 117748 2911621 ~ 2915341 (+) True AMCG00018155
AMCG00018156 mRNA downstream 131542 2925415 ~ 2934755 (+) True AMCG00018156
AMCG00018163 mRNA downstream 153561 2947434 ~ 2948696 (+) True AMCG00018163
TU143458 other upstream 140599 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 220838 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 807994 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1397844 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1807617 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 1967645 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 3155590 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 5099754 7893627 ~ 7894449 (+) True G115590

Expression Profile