RNA id: AMCG00018151


Basic Information

Item Value
RNA id AMCG00018151
length 1962
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00018151
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2832056 ~ 2838291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCCTCCAGATTGAAATCCATTGGCAGTGTCCACTGCGCGGCTCTGCTCACACCCAGCAGCGCAGGGATAAAAGACCAGGTGCCGAGCCCGCTGGACACACCACACACCCGGCCTCAGCTGTCCTGCGCCGCCGGACATGGAGCTGCGACTCTTCCTGCTGTGCGCCCTGGCGGCCTGCAGCGCCTCGGCCCCGGTTAACAAAACCagcacaataaaaaaacaagtcaatGGTAAAGTAGTGCCTGCCATGGATGCTATCATTGCAATCAACCAGAGAGAAACAAAACCCTTCACAGCAAGTCGAACCATCAGCTTCACAGACATTGCCATCCCCAACAGCCGGACTGCCATGGTCTGCCCTGGACTCAAGGACTGTTTTTGGGACAAATCATCTGATGGTTTTGTCTATGTACCATATGTAATAGACCCGAGCTACGCTGCCTCTGAGCAGCGGTTGATCCTCGACACGCTGGCGTCCTTCTCCACCTTCAGCTGCATTGTATTCCAGCCCCGCAGCGACGAGGTGGACTTCATCAGCATCGTGCCGTTGGGCGGCTGCTGGTCGCTCTATGGGCGTGGGGGCGGAGAACAGCAGCTCTCACTCTCCAGGGCGGGCTGCGTGGCGAAACACATCATCAGCCACGAGCTCATGCACGCGCTGGGCTTCTACCATGAGCACAGCCGCAGTGACAGAGACAACTACATCGAGGTCCTGTGGGATAACATCCAGCCAGAGTACCAAAGACAGTTTATGAAGATGAACACCAACAACCTGGACGTCCCTTATGACTACCAATCGATTCTTCACTATAGTTGGAATGCTTTCGCTAAGTCTCCCGCGCTGATGACTCTGCGCTCCATCACCGACATCCCGCCGAGGGTGGGACTGGGCACAAAGATGACTCCCAGTGACATCCTGAGAGTGAACAGACTCTATAAGTGCGATGGAAAGGTCTCCCTTGCCCCCACAACCAAACCCACAACTACAAGcacaacaaccacaaccacaagcCCAActacaaccacaaccacaactacAACCACAGCCGAACCCCTTCTTCCAGATGATGCACCACAAGATGCTTCTGTCAGTGTTGCTAATAAAGCTTGTGGATACAACCTCACAACTGCAACTGGCAGCATTTCCTCTCCCAACTACCCTAATGCctacaacaacaaccaaatgTGCCAATGGAccattacaacaaaaaacaagTTATACCTGACATTCAAAGCCATGGCCCTGGAGGATTCTGTGGGCTGCAAGTACGACTACGTTTCGATCTACGATCTCATCCATAAAACCCACATAGGACCCAAACTCTGCGGCTTCCAAATTCCCTCTCCGATCACAACCCCCAGCAAGAGTATCATGATTGAGTTCAAGGCAGACTATTCCGTCAACAATAAGGGGTTCCTCATATCATACATGACCCTGTGAGGAAATGAATCCAATGGATTTTCTACAGGGAGGACAGAGGTAAATATATTACCTACAGCTGAATGGAAGACTGTAATTGActgtttttgtgcattttaattagtcTGTCTCTGTGGGGgggattattattaatgtaatgttgttttttaatggattgGTTTTACCCTTGCGCTAATTTGTAAATGGTAAAACTGTTGGAGCTGCTGTCCTTTTTAATCTTTCTGTTCTCTGTGTATATAGTCTAACTACATAATGTAAGTTTGTTGAATCCGTTTTATAAGtgacaattataattttgtgcttttgttaaaCCATATTTGATAAATCTCAGGAAACGTAATTTGGACTTCACAAGTTTATGTCCAACATAACTGGAACGTTTACCCTCCTTTGTTGACATCTGCAAACACTGAATGTAATTTAGCCACAAGAGTCACATGACCCTACATGCCACACACTGAGCACACCCTGGggatttattgttttgaaataaaagtttattattaacaatgtaCAA

Function

GO: NA

KEGG:

id description
K08076 E3.4.24.21; astacin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 163395 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 184245 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 456321 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 846335 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 847907 1983652 ~ 1984149 (-) True G114363
TU143599 lncRNA upstream 157744 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 238750 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 301804 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 562141 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 1069728 3908019 ~ 3910399 (-) True G114785
AMCG00018147 mRNA downstream 49044 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018143 mRNA downstream 157705 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018142 mRNA downstream 184339 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018141 mRNA downstream 260108 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018139 mRNA downstream 314599 2515317 ~ 2517457 (-) True AMCG00018139
AMCG00018152 mRNA upstream 1471 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018153 mRNA upstream 13138 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018154 mRNA upstream 33162 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018157 mRNA upstream 44197 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018160 mRNA upstream 219764 3058055 ~ 3060305 (-) True AMCG00018160
TU143456 other downstream 222577 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 543194 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 764472 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 825420 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 1905317 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1222520 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1747771 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1808286 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2448095 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2461816 5300107 ~ 5304429 (-) True G115183

Expression Profile