RNA id: AMCG00018152


Basic Information

Item Value
RNA id AMCG00018152
length 4250
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00018152
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2839762 ~ 2847976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTATCGTAATACAGCCCTCAGTGCAGTGGGAGGACACGTGTCTGTCCGGAGTGTCCAGTGATAAGCGCTCATGAGGGGCTGCGGCTGCCGCTGCGCCTCCCCGGCCCTCTGCGAGTGAGACCCTGGCTACGGAAGCGCGGAGGTGCCAGTTCCGTTTtggcgttttctttttttccggCGGAGATCAGGCTGAGCGGCTGGGAACAACAATGATGTCGGAGCAGGAGGTGCTGAAATGCTCCAGTGCGAGGAACCGCGGCGGGGTGCAGCGGGTGGAGGGCAAGCTGCGCGCCAGCGTGGAGAAGGGGGATTACTACGAGGCGCACCAGATGTACCGGACCCTGTTCTTTAGGTATATGTCTCAAGGCAAACACGCAGAAGCAAGAGAGCTAATGTATTCGGGAGCTCTGCTGTTCTTCAGTTATAACCAGCAAAACAGCGCTGCAGATCTGTCCATGCTGGTGCTGGAGTCCCTGGAGAAGTCAGACACCAAAGTAGTAGATGAAATTTTAGAACACTTGGCAAAGCTGTTTAGCCAGATGGATCCCAACTCCCCAGAGAGAGTAGCCTTCGTCTCCAGAGCACTTAAGTGGTCCAGTGGTGGATCGGGCAAACTGGGCCATCCCAAGCTGCACCAGCTCCTCGCAGTCACACTATGGAAAGAGCAAAACTACAGTGAGTCTCGCTACCACTTCCTGCACTCCTCTGACGGGGAGGGCTGTGCCAAGATGCTGGTGGAGTACTCGGCCTCCCGGGGGTACCGCAGCGAGGTCGACATGTTTGTGGCTCAGGCGGTCCTACAGTTTCTGTGTTTGAAGAACAAAACCAGCGCCTCCGTGGTCTTCACGACGTACACACAGAAACACCCCTCGATAGAACAGGGGCCTCCCTTTGTACAGCCATTATTAAACTTCATTTGGTTCCTTCTACTCGCTGTGGATGGGGGTAAATTAACAGTCTTTACAGTGTTATGTGAACAGTATCAGCCGTCTCTCAAACGGGATCCCATGTACAACGAGTATCTGGACCGAATAGGACAGCTTTTCTTTGGCGTTCCACCAAAACAGTCTTCGTCATACGGTGGATTGTTAGGGAACCTGCTCAACAGCCTGATGGGCGccggggaggaggaggacgggGAGGAAGCCACAGAGGACAGCAGCCCCATTGAGCTGGACTAAACTAGGGCTGTGCCGGCAGGGCTCAGGCTGCATGGGTCAGACAGGTTATATTAGTAATAAACATGAGGCCATTGCTCTTGACTCGCCACAGCAACCGGGAGGAAGGACTGgcgttttcttatttttatttcttttggtttggtttggtttttcccccacattttgttttgttgtttgttggcTCTGGAGAATGATTGGCAGCCAGTGGGTGGGCCTTATTTATCACCGCCAGACACGGGGAAGTGGAATGgagcaagaaagagaaaaacatacaattcaACTTTGGGGAGGTGTTGATGGTGGGTGTCCGTTAACAAGCTGTATGTGTTTTTCTCAGCTAGGAGAGacgcacttttttttttcttatttaggtgcatatttaataatgaaaataaaaataatgttgttattattattattattattattaataataataaatatgtattaaaatatgacatCCCAGCACTTCTTAGCTATGGCTTAAGACTGAGCTGCAGTGAAAAACTGAATTCCGATGAATAAACTAAAGGAAATGAGTGTCAGAGCTGACAGACACAACATCGGATGCCACTGAATTCAGACATGCTGGACTCCCGACGCACACAGCAGGCAATTCACACGCAACATCGAGGCAGGTTCACCCCCATGGGAGACGCCCACTTCAGTGGGAAACCGCTGCGTTATTTATAAATCTGTAGTGCTTTAAGAGTAGAACAGCCAACACTGTTTCtacctgcattttgtttttataacatcCTGAACAAGTGAGTGTGGTCCGCTGGCCACACGTGAGGCGGTGGACTCTGTGGTTGGTTTGCTTCAGCGGCTGCGGTTCAGTGTGCCAACAACTGTTGAGCATGAATGTCATGACAATTCGTGATTAAAAGCTCTCTGGATCGCCCAGCTGCGTCCCACGTTCAGGGCCGGTGGGAGGCAGCGCGTTTCCTTACCTGCCTAAACAACCTGAAGTCTGATTTAAATGCCCCATGTCACTCTTAAGAGTTTCCACACCCCTGCAGGGTCTGAGCATGTGAGTGGAGGCCTGTAGTAGTTTGTCCTCAGGGCGCTGGTTAATAACATCACAATGCATGTCCCCTACAACACAGAACGAGACGTGATCTACTCGAGTTCATTTGTTGTGCAGGTGTGAGGACCACGTGCCTGTagctgtttttttaaggaagACCCCCATTATGAACTGCGCAGCTCCGGTTTTCTAATCCAGTGCTAATGCCCTGTAAAGATGCCACTGAGCGAACCTGAATCCTGCCTTCTGGCAAACGCACCGCAGCTCAAGCATTTTTTTCAGTGCAGAATAAATTCCAATGTCTTGTCTGCCTAAGGAAAGAAACAGACTGGAAAGCATAACTTGACAGTGATGGCTTAATTATGGAATGGGTGTTTAGTTGTGTTGAGGGactactgaaatgtttttgaggATAACTGAAGAATCCAGAGAAACGATTTTATCCCCTGCTCGTTTGGAAATCGCATGGCTCTTCTGATATTCTTCTGGATAATTTAATTTGGTAATGAAACaggaaattataaaataaaaacataaacaattgCATGACTATATTCTGTAAAGTAGACCCTCTTTTTATTTCTACTTTAAGTTGGtggaaattattgtattatccTCTGTGACACCAACTAATAATGTGTGTAGGGGATGGGAAATGGTATAATTTCAGAATCGGAGTTCACATTTGTGCCAGGCCTACTTTTCTGTCTAAGGGGTTTTAACAGTTTTCAACAATGATCTGACACTGACTTCTTAAAAATAGGATGTCCGGGCCATATTAGTGGGCTgaaatctaaattaattcaCGGAtggttgtttattgttttaagttATTAACTTACTTAGTTTCGATATCACCCAATTTGGAATTGCCGACTGGATCACCTCGGCTCTCTGCCCCGACTCGATATCAGCCCAGAAGACGGGAAGACCACATGCATGAGAAACGGGCTTCTTCACAGAGTACTGGTCCACCGCCCAAGCGGCACGGCCAAGGTACTGTAGAGAGATTCAAGATTTTCAAGATGTAAATTTCAAAGCTGCTGTGCTCTTCTATGGAGAGATCAGGAGTCAAACAGATGACCACCATGACAGACTGCCCCCACTGCCCTGGAGCTGGTGTGCACCTTGCATGTTGTAAATCTCAATCTGTTATTTTAGATGCATGAAGCCCGTGGCGTGTCATGGCTCCAGTATAGAGGCCACTTTGATTTCTGACTTTAGCCTCATAACTGCTACACATACATTTACCTGGAGCACAAAAAAATTCGTGCAGTTGTGTGCATCCCctgaaatgttattatttaccACATGCACTTTTAGTTTCTGTAGAAAAATagcacacacattcattttgtgttttacattatatatataaaaaaaggctCTTCTGGCGAAAGTGAAAATATGAGCTTCTAAATCCTTTACTACACATTTTCAAGGTGAGTGAAACAGTGCATCTCCTCTCATGTCACGCACTGTGTTCGTAACACACTCATCTGTGGACACTTCCCAAGCAAATCAGCCtatgaattaatgaaaataagatGCAGAGATCTTGTGTTTTAGCACAGTGATGTCTCCACAGTAATGCCAATGTCTATAAATGCCAAGCTGACCAGCGATGGTCTGACACGACTGACTCTGTTTCCAGCCTCCTGCAgtacattgttttttcatttttccaagTTACAAAATATTGATATCTCTCCTGATAACACATCCAGTAAATGTTTTAGATACATTTCTCTATCGGGACCACTATAAGCTACAGGTTGGCATTTAGACTTGTCAAAAGTGTCTCTCTGCTCCATAAGAGGAATTTGTAGAGATTGTTTTTAAgcaatcattaaaaatgcaattgtatGATTTGTTCTTTTACATGCTGTCCAGTTATGTTTGGCTCCTGACTGGAGGCAAGGGGGATTTGAGAGCCATAACCTGTCTGAACCAAGCTACCCAAGTGTGGGACTGAGCTCTTTtgtaaactgaactgaaaaactATGACtgtacataaaacacattttaaaagccca

Function

GO: NA

KEGG:

id description
K23387 GET4; golgi to ER traffic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 171101 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 191951 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 464027 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 854041 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 855613 1983652 ~ 1984149 (-) True G114363
TU143599 lncRNA upstream 148059 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 229065 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 292119 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 552456 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 1060043 3908019 ~ 3910399 (-) True G114785
AMCG00018151 mRNA downstream 1471 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018147 mRNA downstream 56750 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018143 mRNA downstream 165411 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018142 mRNA downstream 192045 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018141 mRNA downstream 267814 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018153 mRNA upstream 3453 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018154 mRNA upstream 23477 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018157 mRNA upstream 34512 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018160 mRNA upstream 210079 3058055 ~ 3060305 (-) True AMCG00018160
AMCG00018161 mRNA upstream 213637 3061613 ~ 3068554 (-) True AMCG00018161
TU143456 other downstream 230283 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 550900 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 772178 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 833126 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 1913023 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1212835 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1738086 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1798601 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2438410 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2452131 5300107 ~ 5304429 (-) True G115183

Expression Profile