RNA id: AMCG00018153


Basic Information

Item Value
RNA id AMCG00018153
length 7795
RNA type mRNA
GC content 0.51
exon number 23
gene id AMCG00018153
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2851429 ~ 2869367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggcggggcaGGGTGTCAGGGCTCTGTGTGCTGCAGGGGGAGGCTAGGTGGGAGGGGCAGGGTGTCAGACGTCAGCCCCAAACCGTTGGGCCATCTGCTCTGCTTTGGACTCTGGAGgggcaaaccaacaaaaagaaaTGTAGTGCTGCAGCCGGAGGGGTGAGAGTTCACTGCACACAGTGACTCGGTGAGGACCAGTCTCCTGCCCAACAGATGGGGACTGGGCCCTGAACTGTGATTCAGTCAATTGCCCTTTCCGTGCCAGGCACCCTGAGGGACCTGTTCAGGTTCTCCCCGCTACTCTGACAGGGTCCTCTTAAGCAGTCTCCCCCCTCAGGTCTCCAGCGCACTCTTCAGTGCTTTAATTTTGGACAGTCAGTAGTGGGACCAAACTCTTCGCCATGATTTGTGCTGGTATGGTCCTGTTCTTCTGGTTCTGTTGGTGTTGTCCGTTTGTTTTGGTCTCTGTATTCATATCAAACGAAGGATGACCTCTAGAGACTTAGTGGTTTACCTACACAGCTCTATcgttcgtttttcttttttaaattgaaataatcaGCCTAGAGCCTGGTACACACGTACCTAGTTCTGTGTGGTtatgcaaatcaaatcaaatgccACCCTTATATGTAGCCGGCAGATTGCCGTGCTTCTGTTCGATTTCCGCACCACCCTGTGGGGCTGGGGCAGGCGGGGCGCTGGCCTGCAGACCTCTGGCATGATTAattcctttttatatttgtttggcagcacactctcacacattcTCGCATCCATTTTATCTCAACTTATgtcattgaaagaaaaaaaaaaaaaaaaagggtgtttttggtttttaaatgttaaaacaataacgggaagaaaacaaaaggaacacTGAGAGACCCAGTTGTGCAGAAATGgctcctgtctgtctgactcTGCTGGCCGGCCACGTGTTGCCCATGGAAAGGAAATCTGTGAGTGACGGAGGAAACACGGCCGCGGATTGGGCCCAGCTGGTCTCCTTGGTAACCAGGGAGATTACAGCAGCTCTGTCGCTATGGCGAGCGCCACGTGGGGAAAGTGCGCGATTCCCACACAGATCGACAAACGGCACTGCTCTGAGGATTCAGAATGATTGTGCCGTGTGTGTGGATTACATGTAcatataaagattaaaaaaaggcttttgaaTGCAATGGTCCTCCGCTGCAAATTGCAGGTGGCCAAATCTATGTCGCAGACTAGCAGGTTTTCAGTGGATCGGTATGAATCAGACATTTACACCCAAGTGATGAGTTATAATTTTTATAGACcggaaactaaactaaaaataatctttGTGGTTTTCTCAGTTCCTGCAGCTCTGCTTCTCGGGCACTCGCCGTGTGGCCAGCATGAGGCGGATTGAGTCCCGTCTCTCTGCCGAGCAGTCGCGCTGGGACAGGAGGTGGCCAGTCGAGGGTTAACCACCTGCGCCCGCTCCTCCATGTGGGAGTGCTGGGTCTTGATGCCACATTGTGCGCAGCGTACAGCGGGAGTCTTGTGGCAGAATGCGGTCCAGTTATTTTTATCGTCAGTCTGGGGGTGTGCAACATCAATACAGACCGCCAGGCTGGCTTTGCAGGAATTGGGCCTGTTTATGCTTCAGAGTGGTTCATCCGTTAAATCAAGACCCACGccctgctgtttatttttatttgtttgcttcctCCCCCACCACTCTGCATGTTCGTGGACAGACATTCCGATCTGAGCAGCATGGACAGAGCGGAGACTCCCTGGGCCACGCGGAGGTCATTAACACCTTGGTTTCTCCAAAGCCACGCGAGCGCGAGAGCCTCCTCTCTTGGCACGGCCGTGCCCTGTGCTGCAGCCCCGTGCTGGCCCACAGTGGCACGATTGTCTGGGGAGTCACAGCTGCTTGGAGTTTTGGCAGTGGCAGATTAGAGTGGTAGATGCCATCCTGGCAAGTGTAGCTGGTCAATATGGCTGGCGTGAGGCTGGCCATGTGGGGGAGCGGCCCTTCAAAAGCACATAATTGGCTCTGGAGGACTCGGTAATCCCGTGGGATGACCTGGCTGCTGGAGGCTGTGATTAGGGTGCTCTTGCCATTGCTGCTGCTGATCGCTTCAGACCCTGTGCTGATCTGCAGGGGAAGCATTGCCACAGCTGTCTCTTTAGTCTTCAGAGCCCCCCTGCCCATGTGCTGCTCTGACCAGTGGGCCGTGTGTCGGCATTTCTGTGTGAAGAGTCGTCAATAAGCAGCTCTGCTGTAAAGTCCATTTAAGTTGCTTCATCGCTCTTGCTTACTGTAGGACTGTCTCGAGATGAGTGCCAAGACACAGGAGGAGTTGGTGCTGCACAACACCACTTACATTTGTCTTTTTGGCTCGGTTTTGTTTGGTCTTTTCTTGCAAGTGCATAGTTGAAAAGGAAGTGACAAGTTTCTGAAAGCCTGTACTGATGTAAGTATCAAAGGATCTTTTATAGCGCTTGTACTAAACAATACTTGTCGATTTTTGAATTACTCGTATAGCTCAGCTGGGTCACAGTGCAAGAGTGTTTTCCTGACTTTGTGTCACTGAATCATGCTCTCTGTCCGCTGTTGTGAATCATAAAGTACAGGAGCAAATAGTTTAATAGtgtgtaattgttgttgttcagcACTTGTGCTCTGCCAGGATTTTTGTGAAATGCACTGTGGATTAATACTTCACATTGAAATGGTGCTGCATGCAGCTGCTCCCTATCTGTTATGCaggctgtttattttcaaatggttAAAATGCCAGCGTTGCCAAGTATGAGTCATGACAGGACTGACAGCCTCGCTGTGGCAGCACTCAGTTCTGCGGTTGCATAATTTCACTTGAAGCCTTTGACAAAACTGAGCTACTTCTATTTCTTCCAccaaatgtctttgttttcctaTTCCTTTTTCTCTGCACTTCTGATCTTGTTTACTTGAAGGTTTCTgaggttttttttcccccctgttttctctctccttcgCTGTGTTTCACTTTCTCTTCTGAAACCTGAAGGATTGTTTCCCCTCTTAATTCTCAATTACTGAAAGGTGTGATTTGATTATGCGTTCAGTGTAAGATCTCAGGGTAGGAAGAAACTTCTGAATTGTAATTGCTTACATGGGAGCCTCTGATGAATTGAGTTTTAAACGGTAAGAGGCTCTAGCTAGTTGTAATGCCAGTGTAAAAGTGAGAATTGGACTAAATGGAAACCGGTTCCATTGGTCAGTTTTATCAGCACCTTGACTGTACTTGGATAAGGGGGAAAGAGTAAATGAACACTGTACATTGTTTGAGCAAATGTAACCCGAGAGTTTGGTAAACGAGTAATGCAGAAGAACATGGTATAATGGATTCTGGTGCAGTAAGAGGTGTAAATATTGGGAGAGGGGCCATGTGTATCTGCTAGGTATCGACATCACCATGATGACCTCCTGTGGAAAAACGAATAAGAAAAGTGTAATGTTTGTAGGGGTCTTGTCTGCTCACTGATGGTGAACGCTGCATGGACAAGCAAAtggttttaaacaaatgcattcagtGTCTTGCTGACAGCTGCAGGAGGAGTCCCCACAGCTCCTGTGAGCCTTTATCTGCTAATCTCCATGGTGCTGTGGGTTAATTCCTGACCGCGCTGCACGTGGAGAGCGTCTCGCTGCTCAGATCTGTTCAGATCGGCATTCGCGGTCTCGTCAGCCAGGCAGCCGCACTACACATCTGAGTCTAATTCGTGGAAACCCCCTCGCAGCAGGGCCAGGTTGGTGTCTTACGATTGATAAGTGTCAATTAGTGATAAGTTGCTGATGTCCTCAGAAGTGCTGCCCACCTCTCTTCCAAAGCAGAGCTCAAGCTATTCGTCTGCGGCCCTGGATTTTGAGAACAAGCACCGGATCGAGCCCGTGTTCGACTCGCCCAGGATGTCCCGGCGTAGCCTCCGCCTGACCACTGGACACTTCTCTGACGACAGCTTCCTGGACACCAGCAGCCACAGTGTGTCCTATAGCGGCGGCTCCAAGACCTACAGGGAGTCCAAGACTTTAAAGAGCAGGACAGCGAGCAAACCGTCCTCATGCCTGACTCCTCGCAAGACCCAGGTGAACAGCTCTCTCCTGCTCGGCCACAACAGCTTCCAGAGCAGCCACTTGGACTCATCGCTGATGTCCACTGTGCTGGACGAGTCCTCGATACAGGAGAAGACATTTATGGACGGTTGGGGTCTGGATGAGGATGGAGACCCAAAAGGTGCCGACGCCACGCTGATCTTGGCCAATGGGGACATCAACACGGCCCAGACTCAGACCACCATGGTCAACGGCTACACCTGCAACGACTGCAGCATCCTCTCTGAGAGGAAGGGCGTCCTGACCACgtactcctcctcctcttcgtcCACAGCCGCGGGGCATGCGGCCGCCGGGCATGCGGCCGCCGGGCACGCAGCCGCTGGGCACACGACTGCCTCCACCGTGTACTGCCGGGACAAGACCAAGAAGCACAAGTCAGGTGTCCTCCAGCTTGTCAGAGATAAATGCTGCGGCTCGCTTGCTGGTGCGAAGGCATCAGTATGTTCCTTGGTTATGCTGCTCATTCAAAATATTCTAGTGAAGATCGGTTATGAAGCAAAAGCCCATTCAAGCTATTGCGGAAGCATGAATGTCAAGGAACTGATGACTGGAGACGGCCATCTGAATTTAAATGGGTCATTGTGTGACGACTGCAAAGGGAAGCAGCACCTGCAAATGCAGTCGGCCCACAAGCAGTCTTCAAGATCCACACGAGTCGCACGGACGATGTGGCACGTCGTGGCCTGTGCAGgCTACTATTTGTTTCAAGCTGTGCGGACTATCGCCTCTGCCGGTTGGTTTGTTACCAAGAAGCTCTTGTCTGTTCTGTGGGTGGCCGTAGTGTCTCCAGGGAAGGCCGCTAACGGGGCGTTCTGGTGGCTGGGGACGGGATGGTATCAACTGGTGACGCTGATGTCGCTCCTAAACGTGTTTATCCTCACAAGatGCCTCCCTAAACTCTACAAACTCCTGTTGCTGTTGATTCCGTTATTCCTCTTCCTGGGTTGGTGGTACTGGGGCCCGTCTGGTTTGCTGTCCTTCCTGCCGGCTCTGATGCAGTCCGAGGGGGAGGCTGAGTCTGAGATCTTTCCCACACCTTCGTCACCATCCTCACCCGGCGTCTCCGGCTCCTTCGACGCAGAGCGGGTGGCCCAGCTGGAGCGGCGGCTGGCCCTGCTGTGGGACAGCCACACCAAGAGCAGCCGGCAGGGCGAGGAACGCCACGGCGAGGTCCTGGGCCTCTACCACAGCCTGCAGGAGCGGCTGGCACAAGCCAGCAACAAGGAGGCCCTGTCCCTTTGGATCTCCAGCCTGTTTGAGGAGAGGCTGGCCCACCTGAAGGAGGACCTGCAGCAGGACCGGGCAGAGACTGAGAAGAATCAGGACGGGTATCTGGCTTTGCATCAGAGCCACGAGTCCCGGCTGGCAGACCTGGAGAGGCTCCTGCAGATTGTGGCATCCAAGACCGAGGAGCTGCAGCACAGGCAGGACTCGGCCACCCCAGCAGCTGTGAGTGAAGGAAGTGAGGATCAGGGCCTCCTGCTGTCCGAGGTGAAGCGGCTGGAGTTGGAGTTGAACAGAATAAAGGCTGACCTGCTGGGGGTGAAGAGCTGCCAGGGCAAGTGTGACAGACTGGACTCGCTCCAGGACACGGTGGAGGCGCAGGTGAGGGACTCGGTGAAGATGCTGATCTACGGCAGCCGGCAGGCGGAGATGCCCGAGTCTCTGCTGCAGTGGCTGTCCTCACAGTACGTCCAGCAGAGCGACCTGCAGGCCGTGCTGCTGTCCCTGGAGCGCAGCATACTGAGGAACATCAGCCGCCACAGTGGCCACGGCAAAGTGATGCCCAGCACCCAGGTGGTCACCAACGCCGTCCACCACGCCGGCGTCACGGGGATGTCCGAGGAGCAAGTCCGAGTGATCGTGCACAACGCACTGAAGCTCTACTCTCAGGACAGGACGGGTCTGGTGGACTATGCCTTGGAGTCTGGAGGGGGCAGCATCCTGAGCACGCGCTGCTCCGAGACGTACGAGACCAAGACGGCGCTGATGAGCCTGTTCGGGGTCCCGCTGTGGTACTTCTCCCAGTCCCCCCGAGTCGTCATACAGCCTGACGTTTACCCAGGGAACTGCTGGGCCTTCAAAGGATCCCAGGGCTACCTGGTCATCCGCCTCTCTCTGACCATCCTCCCCACCTCCTTCAGCCTGGAGCACATCCCCAAGGCCCTCTCGCCCACGGGCAACATCACCAGCGCCCCCAGGGATTTCACTGTCTACGGTCTGGAGGACGAGTACCAGGAGGAAGGGAAGCTGCTGGGTCAGTACACGTACAGTGAAGACGGAGAGTCGCTCCAGACCTTCGCCGTGACTGAGCAGAACGAAAAGGCCTATCAGATCATCGAGATCAGGGTGCTATCCAACTGGGGGCACCCCGAGTACACCTGCCTGTACCGGTTCCGAGTGCACGGGGAGCCCCACCAGCCCTGAGGGCCCTGACCCGACCCACCCCCAACTGTACATTTTGACCTTTTTTGTATATAGTGGAAGAACTGGGATTATTGACAGACTGAGGAATGTTCCCATGGAGGGAAATGAAGCTACTTTTACATTAAACTTCATGAAAGAGAGATCTGACCGATCCAGAACAATCTGACCAGCTCCTCAACTTACTGGCACTTGACGTCTGCACTGACCGCTGGCTCTCGGCCGGCCTGGGCTTCACGCTGGAAAGGTGGTGACCACTACCCCTACCTTGTAgtagaaaatgcttttatattgCTAACCACTCTGAATTTTATAACGGATGTATGTATAGGACTATAACACGCAAACCCACTCCTTCATTTCTGCTGGCTGGTGGTTGTGTCCCATTGCTGGGATGAACAGACTGCAAACCTGGTCCAAAtgaaccttttatttattgtatttttatttccccaccAAATCTACCCATACAAAACGCAACTGTCTGACGCAgaagtgggggggtgggttgaATTCACGATATTCAGTGGAGCAGGACACCTGGACAGGGCTGACAGATTATCATTGTACATTCTGTAAGGactactgatttttttttttttttcccgatTACATTTAATGGCCGAAGTACATGTTAAACCCTATAGAAATACTCGTATGAATCCACTACCCAAAGTTGACACTATCCTACTGCCTCTGGCCAATGCTAGACCGACGTGGCGCGATGAGGCCGAAtgtaactgtattttattgttcataGTTTGTCTTTAAAGTTGGCTATATCAGTGTTGCTTAAAACAGGTAcacattgtcattttttaaacattttgtttttatgttttatttttttgtacagaaaAGGACCCTCTTTTTCTTGTTATAGAAATGCATATTGCACAAGTCCTCcataatttgtataaatatggtttaaaaaaaaaaaaaaaaaaaggatgcaCTCTCCCGTCTAGATTAGTTGCCCCACTAGCGCATATCCAGGGTGTGCAGGGATGGGAAATGTTAAgaacactatttattttttaagaataatgAGCTAAAGAAAAGTTTGGACTttgtgcattgtatttttgtaaatgcttttcaaTCTATTTTGACCGTCTTGGGGCAgttttttgcttgtttctttttttatatatatattgtctttgCTGTTTAAAGACGGACAAACCGCTTTGGAAATGTTCAAATAATAAAGAGTTTAATTTTCTGAGA

Function

GO: NA

KEGG:

id description
K19347 SUN1_2; SUN domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 182768 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 203618 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 475694 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 865708 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 867280 1983652 ~ 1984149 (-) True G114363
TU143599 lncRNA upstream 126668 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 207674 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 270728 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 531065 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 1038652 3908019 ~ 3910399 (-) True G114785
AMCG00018152 mRNA downstream 3453 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018151 mRNA downstream 13138 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018147 mRNA downstream 68417 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018143 mRNA downstream 177078 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018142 mRNA downstream 203712 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018154 mRNA upstream 2086 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018157 mRNA upstream 13121 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018160 mRNA upstream 188688 3058055 ~ 3060305 (-) True AMCG00018160
AMCG00018161 mRNA upstream 192246 3061613 ~ 3068554 (-) True AMCG00018161
AMCG00018162 mRNA upstream 203822 3073189 ~ 3075636 (-) True AMCG00018162
TU143456 other downstream 241950 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 562567 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 783845 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 844793 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 1924690 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1191444 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1716695 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1777210 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2417019 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2430740 5300107 ~ 5304429 (-) True G115183

Expression Profile