RNA id: AMCG00018158



Basic Information


Item Value
RNA id AMCG00018158
length 1698
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00018158
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2949891 ~ 2965319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAATTCAATgGGAAAGGCGATGAGGGAGACAACTTTTATGTCATCGACCAAGGAGAAGTGGACGTCTACGTGAATGGAGAGTGGGTGACCAGCATCGGGGAGGGGGGCAGCTTCGGGGAGCTTGCCCTGATCTACGGGACGCCTCGCGCCGCTACCGTCAAGGCCAAGACCGACCTCAAACTGTGGGGCATCGACCGGGACAGCTACCGGCGCATTCTCATGGGCAGCACACTGAGGAAGCGGAAGATGTATGAGGAATTCCTGAGCAAGGTCTCCATCTTGGAGTCGCTGGACAAGTGGGAGCGCCTCACGGTGGCCGATGCCCTGGAGCCCGTCCAGTTCGAGGACGGGGAGAAGATCGTGGTGCAGGGGGAGCCGGGGGATGACTTCTTCATCATCACAGAGGTGAGGCCCGGTCCGCCGGGGGGCGGCACATTCCCGCGGGGCTGGACCGGAggCACGGCCTCCGTCCTGCAGCGCCGCTCAGACAACGAGGAGTATGTGGAGGTCGGGAGGCTCGGCCCGTCAGATTATTTTGGTGAGATAGCCCTGCTGTTGAACCGACCAAGGGCGGCGACCGTGGTGGCCCGGGGGCCCCTGAAGTGCGTCAAACTGGACCGACCCCGCTTTGAGCGCGTGCTCGGCCCCTGCTCGGAGATCCTGAAGCGCAACATCCAGAGATACAACAGCTTCATCTCTCTGACCGTCTAGGAGTCTCTCGTGCGGATCGCTGCCTCTGTGTGTTATCCTGTGCACTGCAGTTTGACCTGTGCCGTCGCGTAGCTTTATCAAAATGAATCGTGCATtatatgtgcatttttttatgtaaggaATGGCAGATGCACTggaatgtgtatttaaaaaacagtctCGTTATATAGTACATGGGTCCTTCAGAAGATAGAACAAAAACGAGagcaaatgaaagaaacacGGAAGAAGAAAGTTCGAGATGCATCCTCGCCAGCAGATCGTAGGTTTTGGTCCAGGTGCTGGTGACAGTTTATTAGATTTCTGTGCCATGTTTATTTACAGCCAGttactttacaataattaatttattgatccCTTTTGAAACAATTCTTCTATTCTGGCTGTGTCATTAAGTTTAATACTGTTCATGTAGGTATATACATGTATGAACAGCTCAGTAGGAAGTTTAAGTAAGCATTGAAAGATATTTAAGAACACTTCTCTCGGTTTCTTTGGACATGTATTCTGTGCTTTATGATGTTTTGTAATGGGGTATATGCACCTTAATGATGtctttattttccaaagcaaaCGGTCAGtagtattataaattattaacattcatttgaaaaaagaaaaagaaacttaaATCTCAGGAGCACACTTCATCACCCATACCTGACATTgtacgaaacagaatcttttaTTGAGAGCGAAGGCATGGCATTTTTAATCTGTGGAGGAACAGGGTTACTTGTCTTAAACCATGGaggaaatacaaaagaaaacccagatctatttttttcttaaaacgagaacaaaaaaaacactgtttagACGTAGTTTAGTTATATAAGTCAGAGAGAACACTGTTCTATAGCAGACTGCACAATTACGTTTTACTAAGTCTTTCATATTgcatatttctgtattattcaCACATGGATTTATCTGATCCCAAAGCAAATAAAGAGTACCATCTGATCGGGGGTGTAACAGCGT

Function


GO:

id name namespace
GO:0001932 regulation of protein phosphorylation biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU143562 lncRNA upstream 66923 2882432 ~ 2882968 (+) True G114629
TU143550 lncRNA upstream 82654 2864988 ~ 2867237 (+) True G114624
TU143537 lncRNA upstream 104438 2844305 ~ 2845453 (+) True G114613
TU143463 lncRNA upstream 207205 2670907 ~ 2742686 (+) True G114555
TU143461 lncRNA upstream 281230 2668460 ~ 2668661 (+) True G114553
TU143616 lncRNA downstream 136847 3102166 ~ 3103170 (+) True G114674
TU143647 lncRNA downstream 202844 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA downstream 202844 3168163 ~ 3168826 (+) False G114699
TU143685 lncRNA downstream 271724 3237043 ~ 3237244 (+) True G114731
TU143777 lncRNA downstream 1050759 4016078 ~ 4018982 (+) True G114806
AMCG00018163 mRNA upstream 1195 2947434 ~ 2948696 (+) True AMCG00018163
AMCG00018156 mRNA upstream 15136 2925415 ~ 2934755 (+) True AMCG00018156
AMCG00018155 mRNA upstream 34550 2911621 ~ 2915341 (+) True AMCG00018155
AMCG00018148 mRNA upstream 68045 2879568 ~ 2881846 (+) True AMCG00018148
AMCG00018150 mRNA upstream 122121 2814447 ~ 2827770 (+) True AMCG00018150
AMCG00018159 mRNA downstream 11416 2976735 ~ 2995555 (+) True AMCG00018159
AMCG00018166 mRNA downstream 139701 3105020 ~ 3122175 (+) True AMCG00018166
AMCG00018164 mRNA downstream 159301 3124620 ~ 3139596 (+) True AMCG00018164
AMCG00018165 mRNA downstream 189703 3155022 ~ 3160029 (+) True AMCG00018165
AMCG00018173 mRNA downstream 674603 3639922 ~ 3663201 (+) True AMCG00018173
TU143458 other upstream 302117 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 382356 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 969512 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1226398 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1636171 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 1796199 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 2984144 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 4928308 7893627 ~ 7894449 (+) True G115590

Expression Profile


AMCG00018158 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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AMCG00018158 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018158 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.