RNA id: AMCG00018161


Basic Information

Item Value
RNA id AMCG00018161
length 1872
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00018161
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3061613 ~ 3068554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaGCAGCAATCTTGGCTGAAAACATTGCAAACGTCAATGCAGAGACTATAACTTCATTAGGGCAACAAAGTGTGGCCTTGACACCTGCACAGATCACAGGGGCTCTTACCTCGGTCCTCGTGTCGTCCCTCTCCACTCTGAGTTCGGTGGTTGGCTGGAACCAGGGACAAGCCAACGCACTGGTCCAGAGACTAACTGATGGGGGCTAtcagTTTAACAGTGCAGCTTCGTTGCTGTCATTGGGAACTCTAGTGGAAGGCCTTCCCTCTTCATATCTGATCAACATTGCTGCTTCTGAACTTGTCACTCTTTCTCAAAGTTCAAATTTTGTTAACAATTTATTGAGTGGCCCGCAAATACTGCAAGAAGTATTTGTTTCTCaggtatTAAACCAAGATCCAAATATCATACTGCAAAATGTCCCTGATTCCATGGGAAACTTTATTCCAATGCCCTATTTAATAATTCCTCAATCAAGCTTCAGTATTGAgacaataaacaacaaaacgTGGACACCAGAACAGGTACTACTCTCGACATCTGTGTTACAAGGATTCACCTGCAGTGGGGTGCGGTCAGTCGAAATTTCCAAGGTCAAGAATATTGTCAAAGCTTGCAGACCAAGGAGTGGTAGACAGAAGTTGAAATTAGAAGAAAGTCAGCTGACCTGCATGACTGATTTAGTCACTCAAGATGCTCCCCAGGACTTTGAGAACTACCCGCCAGACATGTTGCTGTACTACCAgtaCAACAATGTCCAAGCATCAAACTGCAGATCATACTTTAATGCAACAGGTGCTGCAGACTTTACAATCCCGTCCCCAATACTGAACAAAGACACTACTCTGTTGGAAAATGCCAAGGAGTGCCTAGGCATAACTGGCACAACTCTTAACAGTGACAATGTTGAAGTGCTGGGCAATATGTGCTGCACACTGAATGGATCCTACATTGAGAACTCAGACTCCTCAATCTTGGAGAAGCTGAAGAACTGTGGGGATCTCACGAGCGAGCAGGTGGCTTCTGTGCAGAACGTCCTTTTCGGAAGCAACACCAAGTATGGAAGCCGTCGTGGAATAGGGTGCACTGCTGGAAACATCACTGAGGTCTCTTTAAACGATGGTGCCTTCCCTTTCGGTTACGATGTGACCCAGTTCAACCTCTGTTTGGATACCAATATCGTGAAAGACAACCTGGGAGCCTTGACTGAAAAAGTTATTGATGAGAACTATGAGAATGTCATTCTGACCAAGTTAGATGAGAGTAATGCCATcatcacaaaatatttaaacaataaacaagcCAACAAAGCCAGCCAAGCCTCCCTGGGAGCTACAGAACTAAATTCAATTGGTGGTACAAACCTGTGTGCTCTTAACATCAGTGTGCTGAACACCATCACCGAAGACAGTCTGAGCAACGCAAAACCGCTGAATGTCTCTGCTTGTTCAGCTGAGCAGAAAGGAGTAATTTACGGCATCGCTAAATCTGCCTTCAGCGCCCAGAGAAGTGATCAGCTGGCATACTACAACCTCATCAAATCTTATCTGCGAGGTGCCCCTCTGGATGATATAAGGAACATGTCTGCACAGAACATTAACATGGACATAACAACCTTCAGAAGTCTCAGTGAAACCGTTATCTTGGGGCTAAGTGTGCCGGAGGTGAAAGGACTGCTGGGCAACGGGCTGCAGGATTTGAAAACGTTTGAGAATGATCCGCTGATTCGCAGCTGGATCTCCAACCAGTTACAGTCAGACCTCAACCTTCTAGGTATCGGCCTGCAAGGAGGAAAGACAGCCCCTGTTCCCACTGTAGTCGGTGCGGTCACAACACCAATACCAGCACCAACacaaacaccaacaccaaca

Function

GO: NA

KEGG:

id description
K20733 MSLN; mesothelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143599 lncRNA downstream 63355 2996035 ~ 2998258 (-) True G114658
TU143462 lncRNA downstream 392952 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 413802 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 685878 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 1075892 1985149 ~ 1985721 (-) False AMCG00018113
TU143625 lncRNA upstream 8487 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 71541 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 331878 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 839465 3908019 ~ 3910399 (-) True G114785
TU143815 lncRNA upstream 959462 4028016 ~ 4064248 (-) True G114838
AMCG00018160 mRNA downstream 1308 3058055 ~ 3060305 (-) True AMCG00018160
AMCG00018157 mRNA downstream 153184 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018154 mRNA downstream 186152 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018153 mRNA downstream 192246 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018152 mRNA downstream 213637 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018162 mRNA upstream 4635 3073189 ~ 3075636 (-) True AMCG00018162
AMCG00018168 mRNA upstream 31176 3099730 ~ 3103442 (-) True AMCG00018168
AMCG00018167 mRNA upstream 73920 3142474 ~ 3150456 (-) True AMCG00018167
AMCG00018169 mRNA upstream 92677 3161231 ~ 3167163 (-) True AMCG00018169
AMCG00018170 mRNA upstream 330739 3399293 ~ 3399919 (-) True AMCG00018170
TU143456 other downstream 452134 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 772751 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 994029 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 1054977 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 2134874 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 992257 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1517508 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1578023 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2217832 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2231553 5300107 ~ 5304429 (-) True G115183

Expression Profile