RNA id: AMCG00018166


Basic Information

Item Value
RNA id AMCG00018166
length 3089
RNA type mRNA
GC content 0.52
exon number 21
gene id AMCG00018166
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3105020 ~ 3122175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTACATTGTTGTGGACAATACGCTGGCTAACTGCATCTTCTGTCAGAAGCCATGACAGGCTGTCGCAAGCGGAGACTCCAGTGTCTGCATGTTTATGAGGCTGCAAACAGCACGTCTATCGACCATGGCAGACTTCAGGACGTTCAATGTGCTCATTCTGGGAATAGGGTTCATGCTGCTGTTTACTGCCTTTACAACATGCGGAAACATTGAAcaaACCGTTATTAAAAGCTTGGCCAACACTACCTTTGAGGGCAGTGGTTACAACAGTCTGGGTATTATATATGGagttttttccatttctaatTTACTGGCCCCCTCTGTCGTTGCAATAATCGGACCACGGTTCACTATGATGCTTAGTGGATTATTGTACAGCGGTTACATAGCTGTATTTATTCTGCCTGCCACATGGTCTTTTTACTTGACATCGTTTCTCATTGGTCTGGCAGCAGCCATGCTGTGGACGGCTCAGGGGAACTTCTTGGTCCTAAACTCCGATGCCACGACTATCAACAAGAACACAGGGATGTTTTGGGTGCTGCTGCAGTGCAGGAAGATGGTGTTTGTGGTCTTGCTCATCCTCTCTGTGCTGGGAACACTGAGCTTCATTATCCTGAGGAAGAACCAGGATGACGAAGAAGCCCTAAATGAGGGAGAGGCCGACTCGCTGCTTTCCGCTCACATGATTTTTAAGCAGAGAGCAGTTTCTGCTGTAAGAGATGCCAGCACAGAATTCAGAACGATGATGAACATGTTTTGCACGAAGACCATTCTTCTCCTGAGTTTCGGCATGGCATACAGCGGTCTTGAGCTGACATTTTACAGCGGTGTTTATGGGACCTGCCTTGGAGCCACGGCACAGTTTGGACCCTCAGCCAAAGGCTTAATAGGGCTCTCTGGGATACTAGTTGGAGTCGGAGAGATAGTCGgtggTGGCTTATTTGGACTGTTATGTAAGAACAACCGGTTCAGACGCACCTCTGTGGTCTTCCTGGGGATGGTCGTGCACTTCATCgccttttatttaatctttctgATCATCCCTGAAGATGCCCCCATTGTGTTTGAAACCGACACACAGCATGAACCCTATCTCATGCCCAGTGTGCCCATCGCCTTGATGTGCAGTTTCTTGCTGGGGCTAGGAGACAGCTGCTTCAACACACAGCTCTACAGCATCCTGGGGTGTCTGTACGCTGAGCAAAGCTCACCTGCGTTCGCCATCTTCAAATTCATACAGTCAATTTGTGCTGCAGTGGCATTTTTCTACAGCGGTTATCTCTTGCTGCCCTGGCAGCTTCTTATAATGGTCATCCTGGGCTTCACTGGAACTCTGTGTTTCTTCCTGGTGGAAAAGATGCAGGATATATCTACCGCTCTAGCGCTGAAGAGACACTGTCGGGCACAGGGGACTGGGGCCTCTAGTGTCCACTGGAGAGCTGCAGACTGCCATACGGTTAACCATGGTGTGTCAGCAGGGGACAGCAGGAGATATGTGTGCACTGAAAGCGAGGGGGTACGGGTGAGGTTTGCACCTAGTCCCACGGGCTTCCTGCATCTGGGAGGACTGCGCACCGCTCTCTACAACTACATCTTTGCCAAGAAGCACAGAGGGAGTTTCGTACTGAGACTGGAGGACACCGATCAGAGCAGGCTGGTCCCCGGGGCGGCGCAGAGCATCGAAGACATGCTGGAATGGGCAGGGATACCGCCAGACGAAAGTCCACGGAGAGGTGGTGCGTACGGGCCCTACCAGCAGTCCCAGAGGCTGGAGCTGTATCGAGAGGCAGCGCAGACCTTGGTGAGCAGAGGGATGGCCTACCGCTGCTTCTGCAGCCCTCAGCGCCTGGAGTTACTGAAGAAAGAGGCCCTCAGGAGCCGGCAGACCCCCCGgTATGATAACCGATGCAGACACTTGCGCTCTGACCAAGTGGAGGAGAAGCTGGGCCGTTCGCAGCCCCACGTGATCCGCTTCCGCCTGGAGGAGGGCGTGGAGCCCTTCGAGGACGTGGTGTTTGGGTGGAACAGGCACGAGGTGGCGGCCGTGGAAGGGGACCCCGTGATCATCAAGGCGGACGGCTTCCCCACCTACCACTTGGCCAACGTGGTCGACGACCATCACATGCACATCAGCCACGTGCTGCGAGGCACAGAGTGGCTCATCTCCACCTCCAAGCACCTGCTCATGTACGAGGCCTTTGGCTGGCAGCCCCCCACCTTCGCCCACCTGCCCCTGCTGCTGAACAAAGATGGCAGCAAGCTCTCCAAACGCCAGGGGGACATCTTCATCGAGCACTTTGTCGCAGGGGGCTATCTGCCCGAGTCTCTGCTAGACATCATAACGAACTGTGGCTCAGGATTTACCAacaatcgACCTGGCAGGACACTGGATGAGTTGATCTCTGAATTCGATGTTACCAAAATCACAACACACTCTGCGCTGCTGGATCTTGACAAACTTCCTGACTTCAATAGGATTCATTTACTCCAGAGAATCGGTGATGATGGCAAGTGCAGGTCCCTGGTCAGAGATCTGCAGGGTCACATTGAGCAGGTTTACGGGCCGCAGATCGAGGATAAGGATGTTCTGCACCAGGAATATATTGAGCGCATTCTTCAGCTACGGAAGGGCCACATAACCTATCTTCAAGAGCTGGTGTCTCCTGCCTATTCTTACTTGTGGGTGAGGCCCACAGTTTCACAAGGCCAGCTGCAGCAGGTGTCTGCAGAATTCAACACCATCCTTGCTCTGGTCTTAGAATTGATTCAGACTGTGGACTTCACTCCCCAAGCCCTGAACCTGGAGTTGAAGGGCTTGCAGCAGAAGACAAAGTCAACGAAATACAGCGCGACAATGAAACTCCTGCGCCTCGCGCTCAGTGGACAGCAGCAAGGACCAAGTGTTGCTGAAATGATGATATCTTTGGGGCCGAAAGAAGTATATCACCGGTTACAGAGAGTGCTGAATTGctgatgaaaaatgaaaacaaaggacTGTAACCATAGATTGAAACCCATTATTGCtctgtgtacatatttattatttttccaacaaACAAGCTTCTAAATTAAAAGTGGATTGTAA

Function

GO:

id name namespace
GO:0006424 glutamyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004818 glutamate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01885 EARS, gltX; glutamyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143616 lncRNA upstream 1850 3102166 ~ 3103170 (+) True G114674
TU143562 lncRNA upstream 222052 2882432 ~ 2882968 (+) True G114629
TU143550 lncRNA upstream 237783 2864988 ~ 2867237 (+) True G114624
TU143537 lncRNA upstream 259567 2844305 ~ 2845453 (+) True G114613
TU143463 lncRNA upstream 362334 2670907 ~ 2742686 (+) True G114555
TU143647 lncRNA downstream 45988 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA downstream 45988 3168163 ~ 3168826 (+) False G114699
TU143685 lncRNA downstream 114868 3237043 ~ 3237244 (+) True G114731
TU143777 lncRNA downstream 893903 4016078 ~ 4018982 (+) True G114806
TU143858 lncRNA downstream 1071167 4193342 ~ 4193996 (+) True G114867
AMCG00018159 mRNA upstream 109465 2976735 ~ 2995555 (+) True AMCG00018159
AMCG00018158 mRNA upstream 139701 2949891 ~ 2965319 (+) True AMCG00018158
AMCG00018163 mRNA upstream 156324 2947434 ~ 2948696 (+) True AMCG00018163
AMCG00018156 mRNA upstream 170265 2925415 ~ 2934755 (+) True AMCG00018156
AMCG00018155 mRNA upstream 189679 2911621 ~ 2915341 (+) True AMCG00018155
AMCG00018164 mRNA downstream 2445 3124620 ~ 3139596 (+) True AMCG00018164
AMCG00018165 mRNA downstream 32847 3155022 ~ 3160029 (+) True AMCG00018165
AMCG00018173 mRNA downstream 517747 3639922 ~ 3663201 (+) True AMCG00018173
AMCG00018172 mRNA downstream 558546 3680721 ~ 3681332 (+) True AMCG00018172
AMCG00018174 mRNA downstream 710402 3832577 ~ 3849146 (+) True AMCG00018174
TU143458 other upstream 457246 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 537485 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 1124641 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1069542 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1479315 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 1639343 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 2827288 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 4771452 7893627 ~ 7894449 (+) True G115590

Expression Profile