RNA id: AMCG00018174


Basic Information

Item Value
RNA id AMCG00018174
length 4168
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00018174
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3832577 ~ 3849146 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcactAAATCAGACCCCAGTACTcgggggctgcagtgtctgctggtttttgatccaacaGGAGATCAAAATTACTTCATTAATGGTATTATTTACTCTGGTaggcttattttatttgtatacccgacaatttgttgatgactcaaaacactgaacacacacaacatttcagagtctggagagaagtatTCAATTCATCCAGtctattgtttaattagacTAATTAAGGAGCTAacagctgggctggaacaaaacccagcagacactgtggccccccaggactaGAGTCTGACATTCACAGTCACTGTCAATGTTAACTTAATTCTAAGCCACATTTGTCTGCAATAAGTATAAAACAGATATAATCATATGTTGTTAACACTGTATAACTGATCACAATTAATTCGAGATTCATACATATTAGTATTGGATCACGAATACATCACGTATTTGaatgaacatgttttaatgtgtacacCTTGATACAAATAAACCATATCCCCAAGATTTACATAGATTTAAATGTCAGCACACATGGACGTATATACTTGTAGGAGAAGTCGAGCACTTTGCATAAGTTAACCCATAAACAGGCAGGACGTCTTGCTGCAGCATGAATATTTAACTCGAAATTTGCTGCAAGGGGATCAGAAACGAAACGGCAGCTTTTGCAGCACTGACGTGTGACCTTTGAATCGAAGCAGGCAGAAGTCACCCACTTGTTTCGGAGACTAGTGCATTATTTTGCAGAGCTGGAGAAATCTGTGTGGGCTGGATGCATGCATCGTTATGAAGTGACTTCGGTGAAACCACATCCTCGCAGCAGAGCAGCCGGAGCAGCCGGAGCGCAGAGCTGTGACGTCGCTCTACACGCTGCCTGGCCGGCGCGGCGCTCCGAGGAGCCACAGTCGCTCAGGGGACCGGGGCATGACGGCAGCGGGAGCGGCTTTAACTGCCCCCATCCAGACATGCACTGAAACGCATCCTTCTGGATTGCAGCCCTGCAAGAAAGAAAACGAGGTTCCCTCAACATCTTCGATGATTGTGTAGACTTTAAAACACCTCTTCAAAAACCACCTCCACCTTAGACAAGACATCATGGAAGTGCTACAAATGACCATAATTTCAGTTCTCCTTTGTGGTCTGATTCAACACACTACGGGCTTCTGCAATGTCACCTGCACTAATGACTACCTTCAGTCTCTGAACTGCACCTGCGCAGGCCAACAACCTGCCCCCTCCTATCAGCTCCTGGGAAATTGCTCGTACGAGGACGGCTCAGCAGAATCAAGCTGTGAGATCACAACTGACCAGAGATGGTGTGAGCTCAGCTTCAAGGGCCACTGTACAGACCTGAGTGAGTTCCAGGGCTGCCACGTCTGTGTGAAGAACAGCAACGTGGAAGGAAGTATAGACCCCGAGGACTGTACCGATGTCTATTTAACAAGCAGCATAAAACCGAAGGCCCCCGAAAACCTGACTCTATTGGAGAACCAGAGTAACTATAATCTGTCCTGGAAAATGTGGTACACAGAGGACAGAGAAGGCTACTACCTGGTTAACAATCTTAGGTATGAGGTGCGAATAAAGGATACATCTTCAGAGAAGCTGACGGATTTCCTGGTGAACGAAGACAGACGATACCTGGTCATTCCCCACAGCCGTCTGGGCAAAGGAAGAGAGTACACTGCCGAGGTCCGGGTCAGCTTGATTCCAGACTTTGATTACTCGGGTCCCTGGAGCGAGTGGAGCCCGGCCTACAAGTGGAGAACACAGTCTGACGGCTGGCAGAGTTACAGCCTCTATGGCGTCTTGCCATTTGTTGCGTTTGTGGTGATCCTGTGTTACATTGGAAAAAGgAGACTGCAGAAGAAGCCATACCTGCACAATTACATCCCCAGCCCCGAAGACTTCTTCAAGCCCCTCTACCTCCTGTATGATGGGGATtttaagAAATGGGTCGGCCCCACCTGCACGTTCTCAGCCTGCGACTTCCTGGAGAAGAACACGGTGGTCCCTGTGGTGGACAGCAAGCACAGGACCCTGGAGAAGCTGTGTGAGATCGAAGGCATGACGAATAGCAAGGACAGTCAGGGCCGGGGTGACGCCTCCTTCTTGAGTCTGTCCACAGAAGGGGGCTTCAAGCTCTACTTCCCCGGAGGCTCAGGGCAGACAAGGGACAAGTCCACTGGCCACATCTCCATCGACACTGTCACTGTGTGGGGCGAGGAGGGCCTGGACTGCCCGGATTACAGCAGCTCTGGGGGAGAGGACCCCTACAGGAGCTGCCGCGGGGGCCACGAGTGCTTCGGCTACCCACCCTCCAGCCTGGAAACGGACGGGCTGCTCAGCTCTGGCGGCAGGAGGAGCGAGGTCGTCTCCTGTGGCTGCGTTTCCCTGGGCTACAGAAGAGGCCAGCAGGCCGGGCAGGATGGGGGGGAAGGCTCTGGTGACTCGCCCGGCCCGGTCGGGCTGTACAGCCTCCACGGCCCCAACGGGTGGCAGCTGGAGTCTGGAGACAATGAGTCCGAGAGGATCTCCCTGGATTCCTTTGTGTCCAACGACCGATCTGAAGACGACGGCTACCCCCGGGTGGGCCTGGACTTGGACACCATCGACAGTGGGTTCGCCGAGTCGGACTGCAGCAGCCCCGTCCACTCGGACTTCAACAGCAAAGAGCCGATGAACCCGGCGGTGTTAAATGATCAGGAGCTGGCGCAAACAAACTACGTCAAACAGTGGGTGGCGTATACCTCCAAGTCCTCAGTGGAAGAGAGTTCCAGCAGCTGAAGTGCGGTGTGACACAGCCCGGTATGCACAGCTGGGCCCCCATGCCAGGTCTCCGGTATGTGCGGTGGGCCACCAGGACAGCCCCTGCGCTGGTCCTCCACAGCACAATCCCCAGGGACAGAGATGTCTTCGTCCAGTCTAAGGTTATTGCATTATTGTTTGCCCATGCCTTTCATAATGTGGTGCAGCAGTCAATCATGCCTTGGTCACGGAAAGACAACACTCGTCATTTCATCACCTGTCCCAAGACAGAGCACCTGCAGCTTGTGGAGAAACGAAAGGTGCTCCCAGAACATACTTTACTAACAGACATTGTTAACTGACGTGATACAGCGTTCTGTGAAAGACTTCACCTTGTATTCCTGGAACTCTAtaggctggtttcacagacccacatCGGTCTTTAACTACCCACAGTCTGGTGCTTATCCCGGTCTGTGAatccagctgtgtgtgtatggaacCATACTAGTGTCTTTATGTTTgtataaacagtattaataaCATTGGAACCGAAGTATGCACAGTCTGACTTCACTATAGCAAAATCCCGTTCATCATGATAATCCATCTTAATTGCAAGAACCTTTTTATTCCCCTTGAGGTTTGCCCTGTCGCGTCCCGCACTTTATGTCATTGCACGTCACTGAACTTCCTGCAGGTTGATGCCCTTCTTTCAAGGTCcaattaatattaaactttCAGGGACTTTAACAGAGGTGATGGCCAGTAAAAGTAAATAACATATTGTTGTCACGCAACCTAACTTCTAACCTTCTACAGTTCTGTTTTAACCATCCCCAACCTGTTCGTCAAAGTGAAGTTGAGCTGTATCTTACTTTGGTGTCTtctctgatttaattttattctctagattttggggagggggtggttgccatttgtttattcattaatggGTTTCTTTTCTCCATGATTTAGTTTTCGTTTTCGTTTTTTCACACaatctacaataaaataaaacacacagttaCTGTACGTTGATTAACACGATACTCAATAATAGACTAATAAAAAGAACTGACCAGATGTTTTCTTATGTGTTGTTTTGAATATTGCACTTATTGGGACTTGGTACTGTAGATTCAAGTTGAAAGTTATACTTTATAGGCTCTTTCATTACCTCCACTGCACTGCCCACCCCTCACAGAAAGTGGGCCTGTTTGTCAATAACAAAGGCGCCATCTCTGTGTTTTGTCcacaagaaaaagagaaaaacataatcTGTCTGGCGATAATTATTTAGTAAATATGATTGTTTACTGTCACATTGCAATCATTTACACTGTGATTTCGAGAGACGCAGGAGTTTATACCCTGTGGGTGGAATTTTCTAAAGTTATCAGAGTTGAGATGTGCAA

Function

GO: NA

KEGG:

id description
K05075 IL21R, CD360; interleukin 21 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143685 lncRNA upstream 595333 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 663595 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 663751 3168163 ~ 3168826 (+) False G114699
TU143616 lncRNA upstream 729407 3102166 ~ 3103170 (+) True G114674
TU143562 lncRNA upstream 949609 2882432 ~ 2882968 (+) True G114629
TU143777 lncRNA downstream 166932 4016078 ~ 4018982 (+) True G114806
TU143858 lncRNA downstream 344196 4193342 ~ 4193996 (+) True G114867
TU143859 lncRNA downstream 345131 4194277 ~ 4198050 (+) True G114868
TU143885 lncRNA downstream 449492 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 537034 4386180 ~ 4386889 (+) True G114940
AMCG00018172 mRNA upstream 151245 3680721 ~ 3681332 (+) True AMCG00018172
AMCG00018173 mRNA upstream 169376 3639922 ~ 3663201 (+) True AMCG00018173
AMCG00018165 mRNA upstream 672548 3155022 ~ 3160029 (+) True AMCG00018165
AMCG00018164 mRNA upstream 692981 3124620 ~ 3139596 (+) True AMCG00018164
AMCG00018166 mRNA upstream 710402 3105020 ~ 3122175 (+) True AMCG00018166
AMCG00018175 mRNA downstream 19239 3868385 ~ 3877825 (+) True AMCG00018175
AMCG00018179 mRNA downstream 51367 3900513 ~ 3910188 (+) True AMCG00018179
AMCG00018178 mRNA downstream 81375 3930521 ~ 3943520 (+) True AMCG00018178
AMCG00018180 mRNA downstream 100595 3949741 ~ 3956739 (+) True AMCG00018180
AMCG00018184 mRNA downstream 131546 3980692 ~ 4013068 (+) True AMCG00018184
TU143458 other upstream 1184803 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1265042 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 1852198 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 342571 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 752344 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 912372 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 2100317 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 4044481 7893627 ~ 7894449 (+) True G115590

Expression Profile