RNA id: AMCG00018175


Basic Information

Item Value
RNA id AMCG00018175
length 2637
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00018175
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3868385 ~ 3877825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCAAGCCAGTAGCAGGCATGTGAGCGCATGTGAGCGCAGGGATCTCTGCGCCGAGCCCCGCTGCGCACACCCCCGTCTTCCGCGCTATAAGAGCAGCGCCCGCCCGGCCGCCCCAGAGCCGCCGCTCAGCACGGAGGTGTGACGGAAACATGAAGCACGGATCAAGATTGCTGGCCTTCCTGTGGGTGATTTATGGTAGTGGTGGCTTGTCTGGAGCCGCCAGATCAGAAGATCACAGCGCTCTCCCGTATTGTGTGAACGATTACGTTGTCACCGTAAACTGCACCATGAAAATCCCTGCAAATGATACTGATGACACCACCTATTACCTGGAGATGCTGTACATTTTGAACGAcAGGCCATTTACTTGCCAGTTTGAAAAGCAAGTAGACATTTACCAGTGCGCTTTCGATGTAAAGTTTATCCACAACACCAGTAATCTCAACGAAATTCGTCTTGAGAAAGCTGAGCTCGAAACTGATACCCAGTACGTTGCAAGGGTGCGCTCTTACTTCGATGGCAAACACTACAGGGGGAACTGGAGTGACTGGAGCTCTGAGGTGGAGTGGAGGACGGAGCCGTCGGTCCGACACACGAAGAAAGGTGAGCCTGATTTCCTCATGATGTTTTTGCAAATCATTTTACCACTGGCAATAGTTGCCGCCGTCCTGCTGTTCTTGTACTTCACCGTACCTGCAAGGTTGGGCATGATATCGTTCAGAAAGGTGCCGACCCCAGCTCCGTTCTTTCAGCCTCTGTACAGCAACTACAAAGGCAATTTCCGGAACTGGCTCCTGTCTGATGGTCTCTCCGGCGAGTCGTTCAGGAGAGACGAAGACTTGAAGATCGACACCCTGATCGAGGCCAGGCCCATAAATAAAGTGGAGAGCGGCTTCCTGACCGGGGCCCCGCCCAGCGCTGTGTGTCCCATCACCTACGTCAAACCCAACTGCAAGGACGGGAGCCTGTGTGGGGATAAAAGCCCAGACCACGACTGGCCTGAGATGTTGCTGGTCACCGACGGCCCTTGCTCGCCTCATCCCGCGTTCCTGAAGGCCAGCTTCGAGGAGATGTTTGGCTCTCTGCCGCTGGACGCCGCCGAGGCCACGGAGCTGGACTCCGGGTGTGTGGATCTGACGCAGAGCCTGGACAGCAGCTGGCCGagccctgctctctccttcgAGCTGCCCGCCGAGCCGGAGAGCGTATGCTACAGCGACGAATACTGCACCCTCTCTGATACCCACAACGGCCTGGTCCCCACCAAGCGGGGTAAGCCAGCAATCAAGAGCGGCGAGCAAGACATGGGGAGCCCACCTCCATCTGAGGGCTCCAGCTCAGATGATAACGAAAACCGCTCACACGATTCTCAGATGGAGAGGAACAGCGAGGACTCGTGCTGTGACAGTCTGTGAAATCGCCAGAGATGGAGAGCTGGTAAAATCCTCTGTTTTGggacacattttgtattgttagaTCAGACCCCTATGCACTGCagtgtaaattgttttaatctAAACGTCATAGATTAAGGTAAATCCCCCCCCAATATATGGCTTTTCTATATCACGATTGATGTGTTGctttttggtgttgttttattttattttgtatgtgtttttacatgCTGACAAGATTTTAAACCTGTAAGTTGTGAGAGTGTGAGGGATCTAGTACTGCTGCTCCAAACAAAGAGCATAATTACTTGAATTACCTTTCAGTATTAGGTTTCTGTTTTATGgtacaataaattatttaattatttgctgtGCTCCTCTTCACTCCAGCATTAAGCCTTGAAGTAGGTACTGGAACCCTGCAATTCTGTAACCGTACAGTAATTGAAACACTGTAtctataaaatgcattaatccaGATACCAACCACACACAGTTAGTGAATGGGTGAAGTCAGTATCACtacaaaccaaataaatgtgCAGGTTTGTTGCTAAACCAGATATAGCAACATGTGTGCCGGTATCAACCTGCACGTCATAGATGCCTGACACCTGACCTCGACGGATATACCGTTCTGATTGATGCCAAGGTTGTGGATGATGTTGTAAGAGATATTATCTGTGTAAATATGAAAGTTAAGTTGTAGCctcatgttttgtgtgtgtgtcgttgCTGATTATGTGTTTCCACATTTGATTCGTGTCTTTGTATGAATTATTGTATCATTGATTCCtacagattaatttgttttccccacCATGTCTTGGAATGTCTTGGCTTTGAGCTTtacttacatttttacatttgtttttgcaatttaCTATACAGTTGTGTGCtcaattttaaagtaaatccgACTGAAAATACTTCATCATAGTGCTGAACTTCATGAGGTGGCAACAAAGATGTAGAcaaatgttttgtcatttttgtaacagatttttatatattccCTGACCTAAAGAATGTCTTGAAATACCCCCCTTTTCCAGAGTACTGTTTtataatgctgttttaaaggGAGACATACGTCTGCAGGATTTTAACCACATTCACCTTGAATGAttgcttaatattaatatattttatacaatgttTCCCTTTCCCCAGAAGCTGCTCAATTCAGGTCTTGCTGTATAATTTtatcagtgaaaataaaaacatgtatgtagTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143685 lncRNA upstream 631141 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 699403 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 699559 3168163 ~ 3168826 (+) False G114699
TU143616 lncRNA upstream 765215 3102166 ~ 3103170 (+) True G114674
TU143562 lncRNA upstream 985417 2882432 ~ 2882968 (+) True G114629
TU143777 lncRNA downstream 138253 4016078 ~ 4018982 (+) True G114806
TU143858 lncRNA downstream 315517 4193342 ~ 4193996 (+) True G114867
TU143859 lncRNA downstream 316452 4194277 ~ 4198050 (+) True G114868
TU143885 lncRNA downstream 420813 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 508355 4386180 ~ 4386889 (+) True G114940
AMCG00018174 mRNA upstream 19239 3832577 ~ 3849146 (+) True AMCG00018174
AMCG00018172 mRNA upstream 187053 3680721 ~ 3681332 (+) True AMCG00018172
AMCG00018173 mRNA upstream 205184 3639922 ~ 3663201 (+) True AMCG00018173
AMCG00018165 mRNA upstream 708356 3155022 ~ 3160029 (+) True AMCG00018165
AMCG00018164 mRNA upstream 728789 3124620 ~ 3139596 (+) True AMCG00018164
AMCG00018179 mRNA downstream 22688 3900513 ~ 3910188 (+) True AMCG00018179
AMCG00018178 mRNA downstream 52696 3930521 ~ 3943520 (+) True AMCG00018178
AMCG00018180 mRNA downstream 71916 3949741 ~ 3956739 (+) True AMCG00018180
AMCG00018184 mRNA downstream 102867 3980692 ~ 4013068 (+) True AMCG00018184
AMCG00018181 mRNA downstream 142891 4020716 ~ 4027794 (+) True AMCG00018181
TU143458 other upstream 1220611 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1300850 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 1888006 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 313892 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 723665 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 883693 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 2071638 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 4015802 7893627 ~ 7894449 (+) True G115590

Expression Profile