RNA id: AMCG00018182


Basic Information

Item Value
RNA id AMCG00018182
length 2337
RNA type mRNA
GC content 0.42
exon number 13
gene id AMCG00018182
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4069108 ~ 4076796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCCTCTGGCCGGCGGTAACTATCATCACACCGGCAGTTGCGAGAGAGGAGCTACAGAAGAAAACACTCGAGCCAAGATGTGCGGTTTCGCGGCGTGTCTGTCGGCGGAGACCTGGACTCTGCTGGCGGTTGTGTGTGCGCTTGTCCTGGCGTATGGCATCTGGCCTCATGGCTTCTTTAACAAGTTTGGCATCCCTGGGCCCAGACCCCTGCCCTTTCTTGGATCATTTTTTGAATATAGGAAGGGTTTACATAAGTTTGACCTGGAGTGCTTccaaaaatatggaaaaatctGGGGGATTTTTGAGGGCAGGAAACCATTATTGTTCACCATGGACACTTCAATGATCAAGAGCATTATGGTGAAGGAGTGCTATTCCCTTTTCACAAACCGCAGGGATATGAAGCTGATGGGCCCTATGTATGATTCCCTGACCATAGTCAAGGATGAGAAATGGAAACGGATCCGAAGCGTGATCTCTCCCTCCTTCACCAGTGGACGACTGAAAGATGTATTTCcaattgtaaaacaatatgCTGATACTTTGGTAacaaatttacaaaacaaagaccagactgtacaaataaaagaTTTCATTGGTCCATACAGTATGGATGTTGTTACCAGCACTTCCTTCAGTGTCAACGTGGACTCTCTCAACAACCCCAATGACCCCTTTCTGATCAACATCAAGAAAATGCTGAAATTTAGCCTCTTTAACCCTTTGATATTTATCATCACTCTGTTTCCATTCACCGTTCCACTGATGGAAAAGATGAACTTCACCCTTTTTCCTGAAGTGATGTCTACCTTCTTCTATGAGTCCCTTCAGAAGATAAAGTCAGAACGGCAGAAAACCAGTCATAGGAGTCGAGTGGATTTTCTGCAGCTGATGATTGATTCTCAAATAACTGATGAAAAAGCAGAGGAGGAATCAGCCAAAGGTCTGACAGACCATGAGATCCTCTCTCAGTCcatgattttcatttttgctgGCTATGAGACGACCAGCACCTCCCTTTCGTTCCTTGCATATAATCTGGCAACCAATCCAGACTGTATGAAGAAACTGCAGGCGGAGATTGATGAAACCTTTCCAGACAAGGCCTGTGTGACATATGAGGCACTGATGCAGATGGAGTACCTGGACATGGTCATCAGCGAGTCTCTCCGTCTCTACCCCGCTGCCCCGCGCCTGGAGAGAGCCTGCAAGCAGACTGTGGAGATCAACGGGGTGACGATCCCCAAGGGAGTCCTTGTCATCATCCCCGTCTACGCTCTGCATCGCGACCCACAGCACTGGTCAGACCCTGAGCTTTTCAACCCTGAAAGGTTTAGCAAAGCTAACAAGGAAAGTATGGATCCCTATGCGTACATGCCATTTGGAGTTGGACCTCGCAATTGTGTTGGCATGAGGTTTGCCCTCATGGTCATGAAAATGGGAATTGTGCAGCTGCTTCAGAGCTACAGCTTGGAGACCTGCAAGGAGACTCAGatcCCTCTTGAAGTAAACATGCTATTTCAGCCAAAACCCATCACACTGAGACTCGCCCCAAGAACTCCCACAAAAAGTCCCTAATAATTGGAAGACTGAAGTTTAATTGTTAAGAAAATCATAGCTGCATGTGTATCTTCTGTTAGTTTTTCTGATTAAATCAACCATTTTAGGAAGCATTCATCAGTTGGCTGCAGTTgattttattagttattttgaTCTGTAGTATAACAGAAGTGTAATTGAACTCTTCTTACCTTTCTGTTGtcacaacaaaattaattaaacaaattgttaTGTACACTTTGCCTACATAATTAAAGGTAGccttatgtttaattaaaggtGGCGTTATGCTTGGGGAGTCATCTACACTGATAGATTAGTCTGGggatatgttttataaattgtaGAAGCAGCTTGCCTTTACACCACATTGGGCATGggccaaattaaaacattaatctaCTTGTCAATTAGAAATTACAATTCTACATAAACAGAACTTTAGTTGtatctttcctttttctccctttcttctgGGGTTTGTTTCACTGTACtcataaacattattttgtacttACATAATGTATACTAAAAGGCTGTGAAAGTAACTCAAAGTTCAACAGAACCTGAATAAAGGAAGaatacacaatcacacaatatccttctgaaacactgaaacaggTCCAGGTGAATGACAAGTTTAGTCCTGCAAAATGTCATAGACATATAGAAACACGGAGCATGTCCTCCCTTTACCTTAAAAACCACTGAAATTATTCTATGGatactttgaaatattttgccTATATAATAAactttatatattacattta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143777 lncRNA upstream 50126 4016078 ~ 4018982 (+) True G114806
TU143685 lncRNA upstream 831864 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 900126 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 900282 3168163 ~ 3168826 (+) False G114699
TU143616 lncRNA upstream 965938 3102166 ~ 3103170 (+) True G114674
TU143858 lncRNA downstream 116546 4193342 ~ 4193996 (+) True G114867
TU143859 lncRNA downstream 117481 4194277 ~ 4198050 (+) True G114868
TU143885 lncRNA downstream 221842 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 309384 4386180 ~ 4386889 (+) True G114940
TU144005 lncRNA downstream 512499 4589295 ~ 4590074 (+) True G114984
AMCG00018183 mRNA upstream 5153 4060811 ~ 4063955 (+) True AMCG00018183
AMCG00018181 mRNA upstream 41314 4020716 ~ 4027794 (+) True AMCG00018181
AMCG00018184 mRNA upstream 56040 3980692 ~ 4013068 (+) True AMCG00018184
AMCG00018180 mRNA upstream 112369 3949741 ~ 3956739 (+) True AMCG00018180
AMCG00018178 mRNA upstream 125588 3930521 ~ 3943520 (+) True AMCG00018178
AMCG00018191 mRNA downstream 62652 4139448 ~ 4154435 (+) True AMCG00018191
AMCG00018190 mRNA downstream 83595 4160391 ~ 4162600 (+) True AMCG00018190
AMCG00018189 mRNA downstream 92439 4169235 ~ 4171925 (+) True AMCG00018189
AMCG00018196 mRNA downstream 109614 4186410 ~ 4193330 (+) True AMCG00018196
AMCG00018197 mRNA downstream 132337 4209133 ~ 4211747 (+) True AMCG00018197
TU143458 other upstream 1421334 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1501573 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 2088729 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 114921 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 524694 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 684722 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 1872667 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 3816831 7893627 ~ 7894449 (+) True G115590

Expression Profile