RNA id: AMCG00018183


Basic Information

Item Value
RNA id AMCG00018183
length 1297
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00018183
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4060811 ~ 4063955 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCATTCAACATTATGATATCCGTCTCTCCGCCAATGCGAAAGCAAAAGCAACGGCAGTGGGCGTCACAGGTGCAGTGACGTCACAAGCGCTATAAAGAGTAGCCCGGCCTCCTCAGCTGCTACACAGTCTAGTGTTGCAGTCGGCAGCGGAGGAGCGCGGAGTTGTTTCTTTTGCGGAACGTTCGATTTCTAGAAAGCCTTGAGTCGCAATGGCACGTACCAAGCAGACTGCCCGTAAATCCACCGGTGGAAAGGCCCCCAGGAAGCAGCTGGCCACCAAAGCTGCCCGGAAAAGCGCGCCCTCTACTGGTGGTGTGAAGAAACCTCACAGATACAGGCCCGGAACTGTCGCTCTGAGAGAGATCCGTCGGTACCAGAAGTCCACTGAGTTGCTGATCCGCAAGCTTCCCTTCCAGCGCCTGGTGAGAGAGATTGCGCAGGACTTCAAGACTGACCTCAGGTTCCAGAGTGCAGCCATTGGGGCTCTTCAGGTAAATTAGACTTTGATTGCATGTTGCCTCCTCAGTAGATGCAATAGACAATAATGCAGCATGGGGTCAGGAGGAATGATTTGACTAGTTACATTATTCTAATTCCATCTGGTCTCTTTAATTGAAGTCCCAAAGCCCCCTAATACAGAGTAGTAGTTTCACACTGATAAATGTGACAACCGGAGCATCTAAATAGTTTGGATTTCATAGTGACTTGTGGGTGCCATCTTTGCAAAGTGGGGGAATTCTTCCTATATGACATCCATTGGCAAAGGCCAGTCCAGCATGTCCTAGATTTCCATGTGAACTTGTTTTCTAGCTTTTCAATACTAGGTGTAAGCTTTTATAAAGTAATGCACTGACCGTGAGAACATGTGGACCAAGATTCACATTTGATACCCATTTACATGAGAACTTATCACCTCTTTGACATAAACTGCAGACTTGGAATGCACTGCTCACAGTATTTACAAAGGTGACCtggtgtgtgtacatgtatataacTTGCTTATTTTTAACTTACAGGAGGCCAGCGAGGCTTACTTGGTCGGTCTGTTTGAGGACACCAATCTGTGCGCCATCCATGCAAAGAGAGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGGCGAATCCGGGGCGAGCGTGCTTAAGCAGCAGCTTTCGAACTTTTATCATCTTTTTGGGGAAAAATCCATTTTTGAAATCTTTTATTGAACTGCAAATGCCTTCATGTGGAGGttcaagtttattttgtatttttgttagtaTTGATAGaaaactaaaaggaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143777 lncRNA upstream 41829 4016078 ~ 4018982 (+) True G114806
TU143685 lncRNA upstream 823567 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 891829 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 891985 3168163 ~ 3168826 (+) False G114699
TU143616 lncRNA upstream 957641 3102166 ~ 3103170 (+) True G114674
TU143858 lncRNA downstream 129387 4193342 ~ 4193996 (+) True G114867
TU143859 lncRNA downstream 130322 4194277 ~ 4198050 (+) True G114868
TU143885 lncRNA downstream 234683 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 322225 4386180 ~ 4386889 (+) True G114940
TU144005 lncRNA downstream 525340 4589295 ~ 4590074 (+) True G114984
AMCG00018181 mRNA upstream 33017 4020716 ~ 4027794 (+) True AMCG00018181
AMCG00018184 mRNA upstream 47743 3980692 ~ 4013068 (+) True AMCG00018184
AMCG00018180 mRNA upstream 104072 3949741 ~ 3956739 (+) True AMCG00018180
AMCG00018178 mRNA upstream 117291 3930521 ~ 3943520 (+) True AMCG00018178
AMCG00018179 mRNA upstream 150623 3900513 ~ 3910188 (+) True AMCG00018179
AMCG00018182 mRNA downstream 5153 4069108 ~ 4076796 (+) True AMCG00018182
AMCG00018191 mRNA downstream 75493 4139448 ~ 4154435 (+) True AMCG00018191
AMCG00018190 mRNA downstream 96436 4160391 ~ 4162600 (+) True AMCG00018190
AMCG00018189 mRNA downstream 105280 4169235 ~ 4171925 (+) True AMCG00018189
AMCG00018196 mRNA downstream 122455 4186410 ~ 4193330 (+) True AMCG00018196
TU143458 other upstream 1413037 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1493276 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 2080432 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 127762 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 537535 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 697563 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 1885508 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 3829672 7893627 ~ 7894449 (+) True G115590

Expression Profile