RNA id: AMCG00018186



Basic Information


Item Value
RNA id AMCG00018186
length 3035
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00018186
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4033690 ~ 4057473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGCGAGGGCCTTCGCGCAGGCGCCTTTCATTGTTTTGACTGAAAATGCCGTCGGTTTCGAAAACGGCGGCGAGCGCTTCTCCTCAAACCGAGAAACCAACCCACTACACCTATTTAAAGGAGTTTAGGACCGAGCAATGCCCCCTCTTCTTGCAGCACAAGTGTACCCAGCACAGACcttttacatgttttcactgGCATTTCCTAAACCAGCGGAGACGAAGACCTATCAGGAGACGAGATGGGACTTTTAACTACAGCCCCGACGTTTATTGTACAAAATACGATGAAACGACAGGCATCTGCCCGGATGGAGACGATAGCTtctccatcatcatcatcatcatcatcaaggCCATTCTGTGGAACCATTTCCTACAGTCTGGGCAGGGCCTTGTCCAGTTAGTCAGCCTGGTAGTGAAGCTGAGCACTGTCTGTAGGAGACCTTGTGGGACTAAGCTGCTGCCTGTCATTGAGGGACTGTCTTTTGAATCGATTTGCAGAGAAATCCAAGCGCAGGAGGCCCTGCAGAATGGACAGCTGGGCGCTGGGGAGGGGATCCCCGACCTGCAGCCCGGAGTGCTGGCCAGCCAGGCGATGATCGAGAAGACGCTCACAGAGGACCCCAGGTGGCAGGATACCAACTTTGTTCTCGCCAACTACAAGACGGAACAGTGCACCAAACCTCCACGCCTCTGCAGACAAGGATATGCCTGCCCACACTATCACAACAGTCGAGACCGGAGAAGAAACCCCAGGAAGTTTAAATACAGGTCCACCCCCTGTCCGAATGTAAAGCATGGCGATGAATGGGGCGAACCTTCGAAGTGTGACAGCGGAGACAGCTGCCAGTATTGCCACTCGCGCACGGAGCAGCAGTTCCATCCGGAGatTTACAAATCCACAAAATGCAATGACATGCGTCAAACGGGCTACTGTCCACGGGGGCCGTTCTGTGCGTTTGCACACGTGGAAAGAATATCTTCCTCCGATGAGCCCATGAGTTCGTTGCTTACTGTGATGCATTCTGGGTCCCAGTCCAAGCCGGGCTCCCAGCAGTATTCTGAGTGTCCGGTCAGTGAGTGGTGTGGCAACGCAAACTCTATAGGCAGTACTGCCAACAACAATGGTCAAATGGTGAATGTTTCATGCACTAGTAGTCCGACTGTAACGTCAGGCTCAGGAAGCAACAGTTCTTTGTCCCCAGTTGGACCCATCAGCAGGCCCAAATGCTTTACTAATGGTAGCTTATGTTCAGAGTCCACCACGTCCAATGTTTCGTCTCCGACGTCTAACTATCCCAAAGCACCGGGGTTTGAACGTGAGGATCAGGCCAAAAACATGAAGGTTCATCCAATGGATGGTAGTCAAAAGTTAATGGACCACGAAAAACAGAATCTTATTAGTGTTTTTTCAGTGGTAAACCCACTGGCGTCGAGTATAACATCCAGTATAACTTCAAGCCTAGCCTCCAGTATTGGCTCGGACAGCTCGTCCCCGACTACTCTGTCAACGATGAATGCAAAAGCTACCCCCTTCTACCCTGGTAGCAATACTGTTGAATCGGTGATAGGTTCTGCTCTGGATCTAAATTTCAGTGACATCAACGTCTCTCTAGACAAAGAATTAGAAGACCAAGAGAACAGCGACCTTGGTTTGACAAATCAGAGATTGTTAGGCGGCTCGGCTCCCGTCAATATTCCTGGCTCCCTGGCCCGCTCTTCCTCGCTgcactcctcctcctcgctcTCTGCCTCCCCGCTGAGCTCGCTCTCTCAGTCCCTGTCCCAGTCGCTCCTCTCCGCAGGAATGGCCCCCCAGCAGAGTCAGCCCCAGGCCCACCCAACCAAAGCAGAGCACGGCCTCCTGGGAACTTCCGCCTCCTCCCAGAACTCCCTCGGTTTAAACGGGGGTGCTGGCAGCATATGGGACTTTGTGAGCGGCAGTTTCTCACCCAGCCCGTCGCCCGTGTTCAGCAACGTCACCTCGACCACTGTGAGTTCCAGCAGCGCTGACCTCGTCAGGTTACGGAGGGACCTGGACGAAGCCAAGCGGAAAATCAAGCAGTGGGAAGACTCGTGGCAGCAGGTAAAACAGGCTTGTGACGCCTGGCAGAAGGAGGCGCAGGAGGCGAAGGAGCAGGCCCAGTCCGCGGAGGCCGAGCGGCTGCTGGCGGCGCAGAAGCGGGACGAGGCGGACCGGCGGCTCAAGCAGCTGCAGGACGACTTCGACTCTGTGTGCCGCTCGCCCAACGTGCCGCTCTTGCGCAGCTACGGCGATCTGGACCAGATGCCCCTGCCCAAGCTGCACGCCCTCCAGAGCCAGCTGCGGGCCGACTTGGACCTCATAGACGGGGTAATATATCAGCTTCAGTCAAAGAAATGTATAGTTTGCCAAAAGCATGACCGGTGCATCGTCCTGCAGCCATGCCAGCATTATGTACTCTGTGAGAACTGCGCGCCTAGCAAATCCGAATGTCCCTACTGTCAGACGAAGATACTGAAGTGGTGATGTAGAGATATTCAAGGTACCCGTTCTGGATCTAGCTCTTTGAAgaactactactaatatattATGTTAACAGTTTAAGTACAGCATTTTGTGTTCTCAGTATTTCATATAGTAATTGAATTGATAGTTTTATTAGAAATTATTAATGGTGTTTGACTGATACATCTGTGGATCTCAAATCATCCAGGGGGTCTGTCAGGATTCGTGAGCATTGTGATATTTCAGAAGCTCCCCCTCAGCTCATTTTGATTACTTAGGTCTATATAATTCCCATTCCAATACCGCATGTGATAATTGATAACACATTTGATTAAAGGTGTCAGTCAAACACTGTTAGCGCTACTAGTTATGTGAAGAAGATTGATTTCTTGTAAAAGCACTTTGTTGACCTGGGGATTTGTTAAAAAGTTACTTTAGAAAATTGCTTCAAGCTGCTTTGtagaattatttttgtttgtttttagttttatttcattttctctaaATATGCTATTATATGAAGCTTTTGTTTGTGTACTGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU143753 lncRNA downstream 123291 3908019 ~ 3910399 (-) True G114785
TU143693 lncRNA downstream 631752 3400432 ~ 3401938 (-) True G114739
TU143670 lncRNA downstream 892380 3140095 ~ 3141310 (-) True G114720
TU143625 lncRNA downstream 955930 3077041 ~ 3077760 (-) True G114681
TU143599 lncRNA downstream 1035432 2996035 ~ 2998258 (-) True G114658
TU143814 lncRNA upstream 3338 4060811 ~ 4064248 (-) False G114838
TU143817 lncRNA upstream 3338 4060811 ~ 4064248 (-) False G114838
TU143920 lncRNA upstream 237838 4295311 ~ 4352363 (-) True G114915
TU143950 lncRNA upstream 328460 4385933 ~ 4386891 (-) True G114941
TU144051 lncRNA upstream 531822 4589295 ~ 4590068 (-) True G115021
AMCG00018188 mRNA downstream 6765 4025743 ~ 4026925 (-) True AMCG00018188
AMCG00018187 mRNA downstream 14866 4013931 ~ 4018824 (-) True AMCG00018187
AMCG00018177 mRNA downstream 207126 3815535 ~ 3826564 (-) True AMCG00018177
AMCG00018176 mRNA downstream 224170 3778175 ~ 3809520 (-) True AMCG00018176
AMCG00018171 mRNA downstream 549787 3481708 ~ 3483903 (-) True AMCG00018171
AMCG00018185 mRNA upstream 8387 4065860 ~ 4067317 (-) True AMCG00018185
AMCG00018193 mRNA upstream 37514 4094987 ~ 4096066 (-) True AMCG00018193
AMCG00018194 mRNA upstream 54200 4111673 ~ 4112830 (-) True AMCG00018194
AMCG00018192 mRNA upstream 66824 4124297 ~ 4125298 (-) True AMCG00018192
AMCG00018195 mRNA upstream 114632 4172105 ~ 4185911 (-) True AMCG00018195
TU143456 other downstream 1424211 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1744828 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1966106 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2027054 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 3106951 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 3338 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 528589 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 589104 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1228913 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1242634 5300107 ~ 5304429 (-) True G115183

Expression Profile


AMCG00018186 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

AMCG00018186 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018186 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050532 False 2457 mRNA 0.51 16 NC_007114.7 45778810 ~ 45813581 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_01047300_01066367.mRNA True 2370 mRNA 0.51 16 CI01000046 1047209 ~ 1066367 (-)