RNA id: AMCG00018187



Basic Information


Item Value
RNA id AMCG00018187
length 978
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00018187
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4013931 ~ 4018824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCaaaaagaagaagcagcagcCGCAGCATGGCAAACCAGAGGGCACCTCTGCCCGGGGGAAGGATGCCCGCCACCGGCACAAAGGAAAGTCCCTGGAGGCGTTCACAGAGGAGATGCACGACGCCCTGCAAGCTTGTGTCGAGGGAGACGGCGCTAAGGAGGAGACGCAGTTCCGGCTGCCCTGCCCCCTGGCCATGTGGGAGCTGGGCCACTGCGACCCCAACCGCTGCACGGGGCGCAAACTGGTGCGCAAGGGGCTGGTGCGCACCCTGAGGCTCAACCAGAGGTTCAACGGCCTCATCCTCAGCCCCATGGGCACCAAGTACGTGTCCCCACTGGACAGGGAGATCGTGGCCCAGAGCGGCGTGGCGGTGATTGACTGCTCCTGGGCCAAGCTGGAGGAGACGCCCTTCAGCAAGATGAAGGGCACTCACCCCAGGCTGCTGCCCTACCTGGTGGCCGCCAACCCCGTCAACTACGGCCGCCCCTGCAAGCTGTCCTGCGTCGAGGCCTTTGCCGCCACTTTCTGCATCGTTGGGTTCAGGGACCTGGCTGTCATCCTGCTGAGGAAGTTCAAGTGGGGGAAGGTGTTTCTGGACCTGAACCAGACCCTGCTGGAGGGCTACGCGGCCTGTCAGTCCGAGGAGGAGCTGCTGATGGTGGAGAGGGAGTTCCTGGCTGCCAAGCCCGAGGAGGAGGACATTGATCCCTTCGACGTGGACTCGGGCAGAGTGTGTTCAAACCCCAACAGACCCCGATGGGccgatgaggaagaggaggagagcgatagtgaggaggaggaatctgatgaggaagaggagggaggcCCTGAGGGAGAGCAGGAGGCGCCTCCACAGAAAGAGGGTGAGGATGAGAAGGAGGGGAGCgacgaggaggaagaggggaagCTGTCCTGCGCCGCCCCCAGCGCCGATGCCATATGGAAAGGCGCCAAGAAAAAGAACAGGCGCTGA

Function


GO: NA

KEGG:

id description
K09140 TSR3; pre-rRNA-processing protein TSR3

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU143753 lncRNA downstream 103532 3908019 ~ 3910399 (-) True G114785
TU143693 lncRNA downstream 611993 3400432 ~ 3401938 (-) True G114739
TU143670 lncRNA downstream 872621 3140095 ~ 3141310 (-) True G114720
TU143625 lncRNA downstream 936171 3077041 ~ 3077760 (-) True G114681
TU143599 lncRNA downstream 1015673 2996035 ~ 2998258 (-) True G114658
TU143815 lncRNA upstream 9192 4028016 ~ 4064248 (-) True G114838
TU143819 lncRNA upstream 9192 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA upstream 9192 4028016 ~ 4087031 (-) False G114838
TU143814 lncRNA upstream 41987 4060811 ~ 4064248 (-) False G114838
TU143817 lncRNA upstream 41987 4060811 ~ 4064248 (-) False G114838
AMCG00018177 mRNA downstream 187367 3815535 ~ 3826564 (-) True AMCG00018177
AMCG00018176 mRNA downstream 204411 3778175 ~ 3809520 (-) True AMCG00018176
AMCG00018171 mRNA downstream 530028 3481708 ~ 3483903 (-) True AMCG00018171
AMCG00018170 mRNA downstream 614012 3399293 ~ 3399919 (-) True AMCG00018170
AMCG00018169 mRNA downstream 846768 3161231 ~ 3167163 (-) True AMCG00018169
AMCG00018188 mRNA upstream 6919 4025743 ~ 4026925 (-) True AMCG00018188
AMCG00018186 mRNA upstream 14866 4033690 ~ 4057473 (-) True AMCG00018186
AMCG00018185 mRNA upstream 47036 4065860 ~ 4067317 (-) True AMCG00018185
AMCG00018193 mRNA upstream 76163 4094987 ~ 4096066 (-) True AMCG00018193
AMCG00018194 mRNA upstream 92849 4111673 ~ 4112830 (-) True AMCG00018194
TU143456 other downstream 1404452 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1725069 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1946347 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2007295 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 3087192 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 41987 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 567238 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 627753 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1267562 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1281283 5300107 ~ 5304429 (-) True G115183

Expression Profile


AMCG00018187 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

AMCG00018187 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018187 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.