RNA id: AMCG00018191



Basic Information


Item Value
RNA id AMCG00018191
length 672
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00018191
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4139448 ~ 4154435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGATGTTGATGTGCCCGGAGATCCAGGAGAGCAGGTTTCACTTCGGTGACGATGCAAACCTGGCCAGAACAAAACCCTGTCAGGGGGCCTTCAATTCAGAGATGTCTCAAACTCATGGCAAAGTCTTGCAGCTCTGGAAGGATGTGGGCCTGACTGATGTAGCCCTTCAGAATCTCATCACGGCAGACCCTCTTACCTGGACCTGCCTGTTCTCAGTGGCACCGCTCCGCCGCCAGCTGGTGTCTGAAGGGGAGTGCGTCGGCGGTGCCGGTGGAAGTGAGATCGGGGAAGCGGTCAAGGGCCGTGCTTTGGCCTGGGGCGgattgggggcgggggggttgttATCTCTAGAATTCTTCACCGTGACTCTAGAACTCTCCCCCACAGCTCCAGAACTGAGTACTGGTCATCTGACCAGCCAACCACTGTCAAGGAGTGAGAAAGCTGAACCAGAGGTGAGAGTGACAGaagatgaggaggaagaggagaaggagctggaggaggaggaggagttaAGCCCAGAGGAGATGAGAgttctggaaagaaaaatgaagaaggagagaaagaaggaggagaagaggaagcTGAAAGAGTCCGGGATGAGTGTGAAGAAGACCGAGCCTGCCAAGCCCACCGCGGCCCAGCTCGCCCTGGACTATCTCAACTGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143777 lncRNA upstream 120466 4016078 ~ 4018982 (+) True G114806
TU143685 lncRNA upstream 902204 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 970466 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 970622 3168163 ~ 3168826 (+) False G114699
TU143616 lncRNA upstream 1036278 3102166 ~ 3103170 (+) True G114674
TU143858 lncRNA downstream 38907 4193342 ~ 4193996 (+) True G114867
TU143859 lncRNA downstream 39842 4194277 ~ 4198050 (+) True G114868
TU143885 lncRNA downstream 144203 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 231745 4386180 ~ 4386889 (+) True G114940
TU144005 lncRNA downstream 434860 4589295 ~ 4590074 (+) True G114984
AMCG00018182 mRNA upstream 62652 4069108 ~ 4076796 (+) True AMCG00018182
AMCG00018183 mRNA upstream 75493 4060811 ~ 4063955 (+) True AMCG00018183
AMCG00018181 mRNA upstream 111654 4020716 ~ 4027794 (+) True AMCG00018181
AMCG00018184 mRNA upstream 126380 3980692 ~ 4013068 (+) True AMCG00018184
AMCG00018180 mRNA upstream 182709 3949741 ~ 3956739 (+) True AMCG00018180
AMCG00018190 mRNA downstream 5956 4160391 ~ 4162600 (+) True AMCG00018190
AMCG00018189 mRNA downstream 14800 4169235 ~ 4171925 (+) True AMCG00018189
AMCG00018196 mRNA downstream 31975 4186410 ~ 4193330 (+) True AMCG00018196
AMCG00018197 mRNA downstream 54698 4209133 ~ 4211747 (+) True AMCG00018197
AMCG00018203 mRNA downstream 141173 4295608 ~ 4296231 (+) True AMCG00018203
TU143458 other upstream 1491674 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1571913 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 2159069 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 37282 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 447055 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 607083 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 1795028 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 3739192 7893627 ~ 7894449 (+) True G115590

Expression Profile