RNA id: AMCG00018195



Basic Information


Item Value
RNA id AMCG00018195
length 4817
RNA type mRNA
GC content 0.66
exon number 30
gene id AMCG00018195
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4172105 ~ 4185911 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCCAACTGTAAGAGCTCGAGACGGCGGCCAAAAAAGtccgttttgtttttaaagtttcgCCTTTTTATGTGCAATTGGACGTTATACACATCCGCAAGTCTGGGTGAGAATGAGCTCGGACTGCCGCTCCATGCTCGCCCGTGTGCCGGCCTGCATCCCGGCCCTGGACTCGGACGCCTCCTGCGGCACATCCGACGGTGAGGAGGAGCTGTTGGTCTCTAACCGAGACCCAGCTCCCCTGCTCCCAGGATCGTCAGAGGAGTCCCACTACTTATTCTTCGAGGACCCAGAGCTCGAgGAACAACTTAGAGGGAGGAAACCAAGGCAGTGTTGGACTGAGGGGAAATCCAGTGATCGGAGCATTTCGGATGACCTTGCCTTCCCCCTGTCATGCGTCTCTGCTGATGCAGCCAGAGGAGAGAGAACCTCATCTGCCAATGGAGACGGTCCTGAGGAGGATTTAGATGCCGAGGCTCATGGGAGAACAGTCGGCCTCAGGGAGCTGCTGCGTTCCCAATCCCAGGAGGAGCTGCGAGAAAAGCCTGAGAAAGTCCAATCAAACGGGCTTTCTCTGCAGCTGCTGGAGCAGTGGGACCTGGATGAAGCTCTGCAGACCCTGATGCACAGGGGGGACACGGCCACTGCTGAGGACCCGGCGCCTATAGCCGCACACACTGACCGGGCCAGGGGGAGGGCTGAGGCCGGTCTGATGGAGAGGTTGACTGCCCTGTGTGTGAAGCAGGCCATAGAGAGAGTGGAAGATAAGGAAGACACCCTGCCTGCTGCTCCAGACTCGGGGCTCAATACTGTCTCTTCACTTCATGCCCAAGATCTCAGGAATGGACGCTGGCTCCTTAAGGGAGTGGAATCAGAGCTACCAAGGGACCGAAGAGCCGAAGCTCCTACAGTCCACATCGACCTGCGCGACCCTGAGCCCCCCAGACACCCCCCCACGGCAGAAACACTGGAGCAGAGCACCGGACCCACAGAACCCAGAAACCACAGTGAACTGACTGGGAAGAGCTTGTTGCTCCAAAAGCTGCGAGAAGCGAACCGGGGGGACACAGGGACAGCCGGTGCTGTGAAGCGACACCGGACCGGATCAGCCAAGAGGAGGAAGAAACTTCGCAGCCCAACCCCGAGCGGGATTGGTGGAGAGACACAGCTTGCAGGGCCGGGCGTGAAACCCCCCGCACCTGAGACGCAGAGCCAGCCGGACAGGCCCCAGGAAGGAGGGACAGGCCCCGGGGAGAGCGTCCACCCGGAGCAGACCACCACCGTCGGCAAGAAGGACGAAGAGATCCTCGCAAACCGGAGGGCCGAGGCGTCTCGGGATCCAGAGCGCagggagcagcagcagaaggaGGCGGCCCGGCGACAGCAGCTCCACGAGCACCTGGAGGCCTTCAAACCCCAGCGCTTGGCCCCGGGCAGGCAGCCCACCGCCCCGGCCACTTCTGTGCTGTACGACGTGGAGGCCTCCTATCTCCCGTCAGTTAGCCCTCTGTGTCCAGAGAGTGCAAACAGAGAGACTGTCCTGCTGACCGTGCGTCTGTCCAGTCCTGGCCAGGTGACCGCAGGTACTCAGGCCAACGGACCGACCCTCAGCTCGGCAGTAACGGGGGCTACTGTGTATAACTGCCTGGTGGCCTGGTTTCTGTCCTTGGTGGGTCCGGACCCCCACAGCTGCGAGGAGAGTGCCGGCGCAGACGGACGGCCACCGTTCTGGGTGGCGGGGCTGCAGCAGCTGTGCGGGGGGGGCGGCCTGGCGCTGTATGTGTGCGCCACTTCGTACGAGGAGGGGCCCCCGCGCACCAGGAGACACAGACGGCAAGAGGAGCGGAGCAGCGCCCTGTTCCCCCAGCGTGTGGGCCGGTTCCTGTCCCAGACGGCTCTGAGCGCCGTCGTCCACTGGGCACCACAGCTCAGCTGGTTGCTGAGCAGGCAGGCCCATCCCCCGCACTTCAGGCCGCCCGCCACCCGCCTCGACAGCTTTGTCTCCGTCAACCCCGAGAAGGAGGCGCTGGAGAAGGTCTTCGGAGCGAGACTTGGATTCTACTGGCGGACACTGGAGACGGAGGACCAGGCCTGTGAGAGCGCAGGGGACCCCACAAGCACGCCCCACACCAACCCCGAGGTGGCGATGGCTCTGGCCTACCGGATGCTGTGGCAGGACCCCCTGGTGACTCACCACACCCTCCAGCTGCTCCTCGACGCCAGCCTGGACGTGTGTGGACTGCGCCTGCTCTTCCCACCACCCGGTCTGCTGAGCGCCAGCACAGGCCCTTTGGACCCAGAGCTGGCCAGGGTGACCGACCCCAACTCCATCAACGCCCTGCACTGCCACAGCCGAGACCTGCCCCTGTTCTACTCCCCCCGCCCGGCCGTCCGCATCCAGCGGGAGCTCTGCGTCTGGTTTGGGGGGAGGGCCCCCAAGGAGGGAGTGGTTCCTGTTGGCCCACAGAGCTGCGGTCCCGCACCCACGGACAGGTCTGTCCCCGTGGCGCCATCCCTGTCCCTCAGAGAGGACAGTAAGCGTGGCGACCAAGGCCCCAGCCCCCGGGACTCGGCCTGCCTCCCCGCGGCTCTCAGTGCGACAGTCGCAGCGGATATCTTCCTGCTGGTGTCCCCGGCCGTGCCCCCCTGTTGCTTTGGAGATGTGCTGTCGGTGTGCTGTAAGCGAGGCTTCAGCCTTCGGGGTCTCCAGCGGCTGCAGCTCTCCCCCAGACGAGCCCAGGGCCTGGGTCTGACGAGCCGGCAGATCCCCGTCTACTGCTCTCCGCCCCCTCCGTATGGCCTCTCAGCGGAGGACGAGCCACCCGTCGCGCTGCCCTCGCACTGCCTGGCGGTCCTGCTGCGGAGGGAGAACGCCCTGCACCACTGTGCCGGCCTGCTGACAGGTCTCATGAGCGAGTTTGCAGAGCAGGGTCTGACGGGCCCAGTGAACCGCAGGCTGCCCCTCAACGTCCGGCTGGAGACCGGCAGCTGCTTCCACGCACTGCCCTACAGCGACCGCCTCCTGCACAGCCTGGGCAGGTCCATGTGGTTGGTGCCGGACTGCGACAGCGTCTACCACAGCCTGCGGTCCACTCGTAGCTTTCCCTCCAACCCGGAAGTGGAGCAGGTGGTGGTCCTGACTCTGACCGGGGCCGACATCGAGGGACCTGGAGCAGCTGTCCTGCGCAGGGTGCTGAGAGGGGAGGCCGCCCAGCTCGGAGGCACAGCGGGTGCCGTGAAAGAAGGGTTCGAGCTGCTGGCGCTGAAGTGGCTCCCCGTGTTGTCGGACCCCCAGGCCTGTGAGGTCAGCCCCTTCGAGGTGGGGGACCAGCAGTGGCGGGGCAGCTTGGCGGCCCTGGCGTCCGCGCCCGCCCTGGTCTGCGCTCTGCGGAGGGTCGACGCCTTCGCCTTCCTGTACCGCCTCCTGCAGGACTGCGGCGCTGGCCTGGCAGTGATGTCGCCCACACCGCAGCTGGCCTTCCGGCAGGCGGCCCACTTCTTCTCCAGCAGGGAGTTGATACCAGATCACAGCGCCCGTCCCTTGCTACGGTTCCTCCCGCCTCCCAGCAGGAGCAGCCGCCCCCCCGCGAAGCAGCCGTGTCCTGACCCGGCACAGTCCGTCTTCAGTTGCATGGTAgaaaGCCCCGAGCCCCTTGTGACGGTGGTGCTGTTCAAGCCTGGCGTGTGGCGCAGCTCCCCAGGGAAGATCCTCAGCAGCGTCCAGCAGGCCGGCTTCTGCATCGTAGGTCTGGCCCTGCTGGTCCTGGGGCCGCAGGCGGCGGCAGCACTGGTGTCCGGAGCCGAGCGCCAGCAGGAGCCTGGAGCCGTGGCCGCCCATGTGCAGTACCTGACGTCCGGCCCCTCGCTGGCTCTGTGTCTCCAGAGAGAGAACGCAGTGAAGAGGCTGCTGGACCTGCTGGGGCCTGAGGACCCCCTTGTGGCCCGGGCCCAGGACCCGTGTCTGTGGAGAGCTCACTACGGCACCGACCTGCTGCACAACGGCGTCTACGGGTCCCGGTCCTACCGGAGCGCCGTGCGGGACGCCAGGATGCTGTTTCCAGAGGGTCTGTGCTGCAGAGAAACCGCACTGATGGCACGAGAGCAGATACCCTGTATGACCTCTGACCACAGCGCCAGCATGCAGCCAATGAACAGCCACCGGCTCGCCCACAGGACCACAGTCCCCAGCCCCCGCACACCGCTCGCACGGCCCTCAGGGTGCAGTGCTCTCCGTCAGACCGCCTGTCTGCTGGTCCCCTCCCGGCTCCTGCAGGCATGCCCCCCCGCCCCGTGGGCCGAGCTGCTGGATCAGCTGGCACAGAGAGCCTGCCGCCTGGTGGGGGGGCGACTGTGCGCCCTGGACAGACAGCAGCGTCAGCGCGTCGGGGAGGCGCTGCAGCCGTCCTGGGAGAGCGGCGCAGTGGTGAGTGGCGTCTCTGAAGCTCGCCGTGATCACGCAGTCGGACCACAGTTACAAAAACAGCATCTCGTATGCCGCTGGGGGCCGGGGAGCGGTACTGCTGACCCTCCGTGTCCCCCGCAGAGCGCCGCGCTGTCTGAAGGGCCCTGTCTCATCCTGGCGCTGGAGGGAGACAACACGGTCACCTGCTTCGCTTCAGTGCTGGACAGtgtctgctgggagCGGCCCGAGCTGCAGGAGGCGAGGCAGAGCCTGCTGTTCCCCCACAGCGAGAGACAGGCAACCAGCCAGCACGGCATCgagccactgcccccccgccTGGGCTCCAGGGCCGCGGAGGCTTCCAGAAGCCAAGGACACGAGCCATACCCTGGACAGCCGCCCACTTCTGTTCTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU143819 lncRNA downstream 85074 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA downstream 85074 4028016 ~ 4087031 (-) False G114838
TU143815 lncRNA downstream 107857 4028016 ~ 4064248 (-) True G114838
TU143814 lncRNA downstream 107857 4060811 ~ 4064248 (-) False G114838
TU143817 lncRNA downstream 107857 4060811 ~ 4064248 (-) False G114838
TU143920 lncRNA upstream 109400 4295311 ~ 4352363 (-) True G114915
TU143950 lncRNA upstream 200022 4385933 ~ 4386891 (-) True G114941
TU144051 lncRNA upstream 403384 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 493629 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 635054 4820965 ~ 4821411 (-) True G115071
AMCG00018192 mRNA downstream 46807 4124297 ~ 4125298 (-) True AMCG00018192
AMCG00018194 mRNA downstream 59275 4111673 ~ 4112830 (-) True AMCG00018194
AMCG00018193 mRNA downstream 76039 4094987 ~ 4096066 (-) True AMCG00018193
AMCG00018185 mRNA downstream 104788 4065860 ~ 4067317 (-) True AMCG00018185
AMCG00018186 mRNA downstream 114632 4033690 ~ 4057473 (-) True AMCG00018186
AMCG00018202 mRNA upstream 6567 4192478 ~ 4196034 (-) True AMCG00018202
AMCG00018201 mRNA upstream 10124 4196035 ~ 4197864 (-) True AMCG00018201
AMCG00018200 mRNA upstream 13991 4199902 ~ 4209121 (-) True AMCG00018200
AMCG00018198 mRNA upstream 33910 4219821 ~ 4225283 (-) True AMCG00018198
AMCG00018199 mRNA upstream 56367 4242278 ~ 4260750 (-) True AMCG00018199
TU143816 other downstream 107857 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 1562626 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1883243 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2104521 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2165469 1985149 ~ 2006636 (-) False AMCG00018113
TU144050 other upstream 400151 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 460666 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1100475 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1114196 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 1114196 5300107 ~ 5304388 (-) False G115183

Expression Profile


AMCG00018195 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

AMCG00018195 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00018195 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.