RNA id: AMCG00018220


Basic Information

Item Value
RNA id AMCG00018220
length 2119
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00018220
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4646147 ~ 4651641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCGCAGCTGGCGGTTCCCGGGACCTCGTTGGCCGGCGCACACGCTGCTGCCTCTTCCGGTTCAGGCGGGCATGGACCAGGACACCCCGGAGGAGGTCTTGGCCGAGTTCAAGGACAGGCGGCTGGGGGTCGGGGGCCTTCTGCAGATCGCGGCGGGCACTGGGCTGACCGCCTACGCCGTGTGGGTGGGCGTGCTCATGCCAGGCTTCCGCAGGGTGCCTTTGAGATTACAGGTGAGCGGGAACGAGCGCGGCCTGAGACAGGACGTGACCCGCGCCTCTCAGGAAGTGCTCTGCTGGGACCTCCTCCATGTCGTCCGTGTGTCCCCTCCTGAGGCTGTCACGGACGTTCCCTATCTCCCAGCCAGCCGGGTGCAGGTGAAGAACGTGATGACGCTGCTGAAGGGTCGGTCTGGGCGCATCGCAGACCTGGGCTCCGGAGACGGCAGGATTGTACTGGAGGCTTACAGACAGGGCTTCTCTCCGGCAGTGGGCTACGAGCTGAACCCCTGGCTGGTCCGCCTGTCCAACTTCCACGCCTGGAGGGCCGGCCACTCTGGGAAGGTGTCCTACCTGCGGGAGGACCTGTGGAAGGTCAGTCTAGCTGATTGTAAGAACATCACAGTGTTTCTGGCTCCTAGTGTGCTCCCGCTCCTGCAGGAGAAGCTGATGACGGAGCTGTCTTCAGACGCGCTGGTGGTCGCCGGCCGCTTCCCCTTCCCCGGCTGGACAGCGTACCGCATCGAGGGCGAGGGGGCGGACCGCACCTGGGCCTACAACATGGGGGCACAGCGCCAGCCTGGCACCCACACACAGCAGGCAGCAGAAGCCTCCAGTGCCCAGCCAGACGTGCGTACAAAGCCGTAGCTCTGCTCTCCTCCAGCCCGGGAAGACTGCGGACCTGCTCTGCCTGGTTCACGCTGGAGAGATTGGCGGTGGGCGTCCGAGTCACGGCACACAGCTTGGGTGGACCAGTCTtgccaaaaaatacataattcatttattcaaaGACAAGGTTCACTACGTCCCGTACCTACGCTGTTTTTGgtgggatttgtttttacataaatcTGGGTTCAACATCCCCATCTACAGTCTCAACGAGAGACCAGAgtacttaaaaataattgtattttaggTTTTTAGATTGCTGTTTTAAAAGTGGAGGAAAGATTATCCCCCAGCATGTGTGCTATATATAGTTGATTTTAAACTGTTACTCTGAACCCCAACACTGTAATTCCTAGTGGGGCTCATAGATGTGGTCAGTGGAGTCTCAAAATAATGTTAAGTATTCCCAATAAGGAGAGTGGAGTACCAGGATATGTTAGCCATAAGTCATCTGGGAAGAGTCAATATGAACAGTGATCTCTTCATGTTTTCACCTTTGAGACCAGTGCTACGATCTATAGACAGTCAGAACTACAATGCAGAAGgttttagtaatttaaaactGGTTTATTTAAGTCTTATCAGTTCACAGTCCTGTGTTTCATATCTTGTGAAGGTAAATAACGGGGCTTTTTATGTAGCTGTAATGGTCCATATATGTATCGTTAACCTGCTACACTTTTAGCTTTTGTTACATACCACCTGGTCCTGTAACACCCTTTGAAAAGGCAATCTTGATGAGTTAATCTATaaccaaaaaagaaagtgataattttttcatatttgttgccaataaaataattacagaataaGCCTCAGAGACCAAATATCTCATTTGTGTCCCAACTTCACTCCTCAGTGTTCATCAAGGGGGAAACAACAGGTAAGAAAGACGACAGGTGAGAATTTCTTAATGGGGCTTGTCTGTACAATTGCCTTATTGCATTTCTGAAACCAACAGCCACCCCCAACACAATGCCAGATAGTGATTCAAATCGAGAGGGTTCCTTGTCAGCGTATCAGCCGATCGCGTCTGGGGTTCATTCCTGCTGTGTGGGATCTGCTTCAGACCGGTGGCCACGTGGCGGAGGTGTttggtcagaggtcagaggtcggAGCTGGGGTTCCTTTTGCCGCGGCGCTGGAATCGTGGCTCGGGGGCGTCCGCGCTGTGGGCACGCCCTGTATCGGTGCCCATCAGCTCCCGCAGCCGCATGATCTCCTG

Function

GO:

id name namespace
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144051 lncRNA downstream 56079 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 259256 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 293784 4295311 ~ 4352363 (-) True G114915
TU143814 lncRNA downstream 581899 4060811 ~ 4064248 (-) False G114838
TU144070 lncRNA upstream 27899 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 169324 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 385090 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 501411 5153052 ~ 5203873 (-) True G115144
TU144208 lncRNA upstream 576339 5227980 ~ 5243187 (-) True G115157
AMCG00018219 mRNA downstream 5889 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018221 mRNA downstream 17514 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018223 mRNA downstream 35822 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018210 mRNA downstream 185427 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018205 mRNA downstream 266100 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018222 mRNA upstream 14544 4666185 ~ 4672356 (-) True AMCG00018222
AMCG00018230 mRNA upstream 37174 4688815 ~ 4689879 (-) True AMCG00018230
AMCG00018226 mRNA upstream 43721 4695362 ~ 4697902 (-) True AMCG00018226
AMCG00018227 mRNA upstream 84724 4736365 ~ 4744572 (-) True AMCG00018227
AMCG00018228 mRNA upstream 94939 4746580 ~ 4761133 (-) True AMCG00018228
TU144050 other downstream 57850 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 581899 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2036668 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2357285 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2578563 2006906 ~ 2067584 (-) False AMCG00018111
TU144242 other upstream 634745 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 648466 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 648466 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 705205 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 1298780 5950421 ~ 5951055 (-) True G115320

Expression Profile