RNA id: AMCG00018232


Basic Information

Item Value
RNA id AMCG00018232
length 669
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00018232
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4823825 ~ 4826013 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTCCAATCGATCGGTCTCTGAGGCGCCAATCACACAGTTTGTAAACTGCAGGATCCTGAAAGACCATCGGCTGCAGAGGGAGGACCTCTGGGTGCGAGAGGGGAAGATTCTGAACCCAGAGAAGCTGTTCTTCGACGAGGAGGGGTTCGCAGACACCCAGGTGGATTGTCAGGACAGAATCATCGCCCCTGGGTTCATCGATGTTCAGATCAATGGTGAGGCCTTGTCTCTTCTTGGTTGTGCGGTGGTGGGGGTCTTCTTGGAGAACTGTCACCCCGTGCACAGGACAAAGTCTAGAGGAGGCTATGGTATCGACTTCTCCCAGGCCACCGATGATGTCAAAGGAGGGGTGGCTCTGGTGGCGAAGAAGATCCTGGCCCACGGCGTCACCTCCTTCTGTCCCACGCTAGTGACCTCACCCGCTCATATCTACCACAAGGTGCTTCCAGAGATTTCGGTTCACGATGGTGGCATTGAAGGTGCGGGGGTTGTGGGAGTTCACCTGGAGGGCCCCTTCATCAGCCTGGAGAAGAAAGGAGCGCACCCTGAACAATACTTGCGCAGTTTCCAGAACGGTGGCACCCGGGACCTGCTGGACACCTACGGCCACCTGGACAACGTCGGCATCGTGACGCTGGCCCCCGAGCTGCCCAACAGCAGGGAG

Function

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0019262 N-acetylneuraminate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144111 lncRNA downstream 2414 4820965 ~ 4821411 (-) True G115071
TU144070 lncRNA downstream 144076 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 233757 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 436934 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 471462 4295311 ~ 4352363 (-) True G114915
TU144144 lncRNA upstream 210718 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 327039 5153052 ~ 5203873 (-) True G115144
TU144208 lncRNA upstream 401967 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA upstream 405605 5231618 ~ 5233417 (-) True G115160
TU144238 lncRNA upstream 453073 5279086 ~ 5279296 (-) True G115170
AMCG00018229 mRNA downstream 37343 4763728 ~ 4786482 (-) True AMCG00018229
AMCG00018228 mRNA downstream 62692 4746580 ~ 4761133 (-) True AMCG00018228
AMCG00018227 mRNA downstream 79253 4736365 ~ 4744572 (-) True AMCG00018227
AMCG00018226 mRNA downstream 125923 4695362 ~ 4697902 (-) True AMCG00018226
AMCG00018230 mRNA downstream 133946 4688815 ~ 4689879 (-) True AMCG00018230
AMCG00018239 mRNA upstream 323887 5149900 ~ 5155174 (-) True AMCG00018239
AMCG00018240 mRNA upstream 329359 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018246 mRNA upstream 380370 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018248 mRNA upstream 396874 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018247 mRNA upstream 407607 5233620 ~ 5269405 (-) True AMCG00018247
TU144068 other downstream 172213 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 235528 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 759577 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2214346 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2534963 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 460373 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 474094 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 474094 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 530833 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 1124408 5950421 ~ 5951055 (-) True G115320

Expression Profile