RNA id: AMCG00018239


Basic Information

Item Value
RNA id AMCG00018239
length 1467
RNA type mRNA
GC content 0.61
exon number 11
gene id AMCG00018239
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5149900 ~ 5155174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATCGAGAATCAAGAGACTGGCAAGGAAGTGGGTGGAGGCCGGGGAGAAAATGCGGCAGAAGATTGCTCACAGGTCACAACAGCGCTTAAAGGTACTGCTGTACCCTGGGGTGTTGGCAGGGGGTGCAGGGCAGCATTTTGGGGATATGGTGGACAGAGGGGGGCCCCTGGGGGAGCTGGTGCAATGGGCGGACATGAGTGCTACTCTCTACCTCCTGGGACACAACCTGACCTTCACCAGCTCTCAGTCACACATGCACAGCCTGATAGGAGCTGCACCAGGAAAGGGAAGCTGCCCGATCCAGAGTGCCCTACCCTTTGACCTGCTGTACACCGACTACCACGGCCTGGTCCAGCTCCAGGGAGCAATGGGACTCTCATTCCAGCACTACCGACCCTGCGTTTCTTCCTCCCGACATTCCGCCCATCCTGtgattttcttaaataaatacccATCTCTCACACATCGCTGTCACTGCAGTGTTTGGACGCATACGCCCGACAACTCCTTCATGGGGTTTGTGACCGAGGAGCTCGCGGAGGAGGCACAGACACACGAGAAGGAAAACATGGCTGTCGTCTATGGGAAACAAGACTACATGTGGCAAGGGAAGGAACGCTACTTGGAGGCCATCAGCCAGGAGCTGGAGATCCACGGGACGGTGTACCAAGAGCCCGGCAGCCTCCCACGCCTGCCTGGATACGTCACTAACCACGGACTGCTGCCTCAAGACCAACTCCTCGGCCTACTGAGGAGGGCCAAGCTGTTTGTAGGACTGGGGTTCCCCTACGAGGGCCCGGCGCCCCTGGAGTCCATCgcgtctggctgtgtgtttctgcagcCCCGCTTCCAGCCGCCCCACTCCCCTCAAAACAGTGAATTCTACAAAGGAAAGCCCACGACCCGCCAGGTGCACTCCCAGCACCCCTACGCCGAGAACTTCATCGGCAAACCCTACGTGTGGACGGTGGACGCGAGGAACTCCACCGAGATCCGGCACGCTGTCAGGACCATTCTGCGCACACAGgTGGAGCCCTTCACTCCCTATGAGTTCACCAGTGAGGGCATGCTGGAGAGAGTCTTTGCCTACGTCTCTCACCAGGATTTCTGCCGTGCCCCTCCTCCCACCTGGCCCCCGGAGAGCACCCTGGTCCCGCACCTGGGAGCCCCGGGCCAGTCCTGCGTGGCAGCCTGTCACCAGGTGTCTCTGGTGTGTGAGCCAGCCTTATTTCACCTCCTCAACAGCCCTGCCTCCTTCAAAAGACTGGGCCTGACCTGCTCGGGTGCTGTGACGGAGGTGAGCCACCTGTACCCGGCGTACCACCGCCGGCGCCGCCTGTGCTGCCTGCAGAAAGAGACGCTGCTGTTCAGCTGTGCGGGGGGGGGGCCTGGCCTCCGCAGGCTGTGCCCATGCCGCGCCTACCAGCCAGGTCAGGTGGCCCTCTGCCAGGGCTGCCTGTAA

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144144 lncRNA downstream 91314 5036731 ~ 5058586 (-) True G115100
TU144111 lncRNA downstream 328489 4820965 ~ 4821411 (-) True G115071
TU144070 lncRNA downstream 470151 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 559832 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 763009 4385933 ~ 4386891 (-) True G114941
TU144208 lncRNA upstream 72806 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA upstream 76444 5231618 ~ 5233417 (-) True G115160
TU144238 lncRNA upstream 123912 5279086 ~ 5279296 (-) True G115170
TU144240 lncRNA upstream 128900 5284074 ~ 5284333 (-) True G115172
TU144241 lncRNA upstream 129771 5284945 ~ 5285516 (-) True G115173
AMCG00018232 mRNA downstream 323887 4823825 ~ 4826013 (-) True AMCG00018232
AMCG00018229 mRNA downstream 363418 4763728 ~ 4786482 (-) True AMCG00018229
AMCG00018228 mRNA downstream 388767 4746580 ~ 4761133 (-) True AMCG00018228
AMCG00018227 mRNA downstream 405328 4736365 ~ 4744572 (-) True AMCG00018227
AMCG00018226 mRNA downstream 451998 4695362 ~ 4697902 (-) True AMCG00018226
AMCG00018240 mRNA upstream 198 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018246 mRNA upstream 51209 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018248 mRNA upstream 67713 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018247 mRNA upstream 78446 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018245 mRNA upstream 124180 5279354 ~ 5283933 (-) True AMCG00018245
TU144068 other downstream 498288 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 561603 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1085652 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2540421 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2861038 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 131212 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 144933 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 144933 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 201672 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 795247 5950421 ~ 5951055 (-) True G115320

Expression Profile