RNA id: AMCG00018249


Basic Information

Item Value
RNA id AMCG00018249
length 8178
RNA type mRNA
GC content 0.53
exon number 22
gene id AMCG00018249
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5286386 ~ 5304453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTACAGTGAGGGGAAGATCTGTTGCAGCGGCGCAGCTTTCATTTCGGCGTAAAAGTGCACGAAACCGGCCGGTCGCACCTTCTTGCACCCGGGCTGGATAGATAGCTGAAACCGTGGGGGTCAAGGTGGTTTTTATTCGGTGTCCGGGGGGCTTTCTGATCCGAAGTTATCAGCCGACGGAGCAGCGAGTTTGGGAAGAGAGTGGAGCTGTTTTCTAGTGGAGCCGCGGCGAGTTCCAGCCCCAGAGAAAAGGCGAGAGCGAAGGGAGACCGTCGCAGGCAAAGCCCTGATCTCGCCTTGAATATGCACCATTTAACCCGCTGTTTTACTCCAAAAACCTCGGATCCAtggtgaggagaaagaagataCCGTCCGCCCTCGAAGACCACCAAAATGGGATGACAGTGAAGCCCGGGGACGGCAGCGGGGATGAAGGGGCGAAGAAAGCGGGCAGAAAGCTGGAAGGCGGCGAGGAAGAGGAGAGCGCAGAGCCGGGGAGCGACGAGAGCAATACAAAGAGAGACGGGGAGGAAGATCTCCATCCATCATCTGCGGGTCCATGCAGGTCGGCACCGGTacctgcctcctcctcctcctccgccccGGGTCCGGACCTGCACCCCCAGAACCAGGACCAGCATCACTTCCTCAGGTCCAGCGTCCGACCGCCCAGCAAACGCCTGAGGAAGGAGTCCCTCGCCTCTGCCGTGAATGGGCACAGCGGGGCCAAGGGGAAAGGAGCTGAGAATGGCGCGGCTGTGCTGGTGGGGTGCGGCCCCTCGGGGTCCCCTGTGAGCTCAGGCAATGCCACCTCCAAAACGGCCCCTCGCAGCCTGGGGCCCAGCGACAAAGAGGAGGGGAGCCAGAAAAAGGCTCGGCGCCAGTGGGAGTCCTGGAGCGCGGAGGATAAGAACTCCTTCTTCGAGGGGCTCTACGAGCACGGCAAGGATTTCGAAGCCATCCAGAACAACATTGCACTAAAGTACAAGAAGAAGGGCAAGCCAGCCAGCATGGTGAAGAACAAGGAACAAGTCCGCCACTTCTACTACCGCACCTGGCACAAGATCTCCAAGTACATCGACTTCACAAACGTTTACTCCCGAGGACTGAAGAAGTCTTCCCAGGAACTTTATGGACTAATCTGCTATGCAGAGCTGAGGAAAAAGGTTGGAGGCTGTATGGATGATAAAAATGCTGCCAAACTCAATGAGCTCATTCAGCATGGGGCGACTACAGTGCGATCCAAAGGGAGAAACCTGCGCATCAAGGCGCCCATGTGCCGGGCACTGAAGAAGCTGTGCGATCCCGACGGGGTCAGTGACGAGGAGGACCAGAAACCGGTCCGGCTGCCCCTGAAGGTGCCCGTGGAGCTGCAGCCCCGCAGTAACCATTCCTGGGCACGGGTGCAGAGCCTGGCACACAACCCACGCCTGAGGATGGTCGTGGAGCTGCACAGGAAAGTGTCCAGCCTGATCGAATTTCTCAAGCAGAAGTGGGCCGTCCAGGATCACCGCATCCGGAAGAGCCTGGAGGAGCGGCAGGCGCTGGACGGGCCCCAGTGCTCGCCTTCGGGTGAGGCGAGGGAGGAGCTGTTCTTGTACCCTTCAGAGAGCAGCACCCTGACTGCTCTGCCCGGTGTGGCCCGCGTCGTCCACTCCAAGGCTTTCTGCACCGTCCATTGGCTGGAGAGCGGCAAGTGCCGGCCCGGTACCAAGGAGCTTCCTCCTGCCCAGATGCTGGGCATCCAGACGGCCCACCGAGGCACGGGGCGTCAGGGGCGCACAGAGCGGCTGGGGGAGCCTGCAGACGTGGCGATGGACACTGAAGAGCATCCCATGTCGGAGCCCTTCCCCGCTGCTGAGGGGCCCGGCCTGGACCTGGTCATTCCAGGGGATTGTATCTGCCCCATGGAGCACTTATCGCCTAGGAAGGCCCAGATGGATGCTTTAGGGGATGGCGTGGCGGCGGTGCCCATGACCTGCGGGGACGAGAGGGGCGTGGTGGCCATGCCTCTGGAGCCCGGGCCCCCAGAGGGAGCTGTCCCCATGGAGCCTGCGCCAGGGGAGGTTTGCACTAAGGAGGACGAGGCGGCCGAGGCGGGCAGCCCGGAGGCGCGGGTCGCGAAGGAGGACGGCGGGAGGCCACCCCGGCAGATCCGGGAGGAGGGCTGGAGCACACGCAGCACCGAGAACGTCACGCTGGCCGAGCTCTACCTCATGCTGGGCAAGCCGGACAAGCTGCAGCTGGAGTACGAGTGGCTGCCCGTGTCCAAGGAGGACGGCCGGCCGCACGCCAACCCCCACGGCCATAATACCCACCGCGTGCTGCGCTGTCTGCTCAGGCTTGTCTCCTCCGAGGTCAACCCCAAACCGGCTCCGGAGTTGTGCTCCACTGCTACGTCTCCCATCAAGTCCTTCCCGGAGGACCAGTCCCTCACGCCCCCAGGGAAGATCCTGTCGGTGGGGGTGCGCAGTCCGAGCTGCGGCCGGAGCCAGGCGGCCACGCGGGGGGGCaagctgctctctcccacagcCAGCTCCCAGGGTGTGCGCAACCTGCCCCGCTCGCTGATTATCCCGGGGGTGGGCGGCTCGGGTCCCGGGGAGACCGACAGCGGTCTGTTTGCCATCCCCACCACGCTGCCGCCCAACAGCCGCCACGGCAAGATGTTCTCCCCCAACAAGGAGGCCGAGCTGGCCTTCAGACAGCAGCTGGACTCCATCAGTATGCAGTCGGACATCTTTCTTCCCAAGCAGCGGAAATTCAGGAACCGCCATCTCCGCAAGCCGCTGGTGGTGCAGAGGACGCTGCTGCCCCGGACAGCAGGAGACGCCTCCCAGCACGTCTGCTCCTTCTCCATCTTGTCCAACTCCTCCGTGGCCGGTAATGCCCCGCCTCCCCCTCTAGCCGTCGCACACCGTAAGAGTCGGACGCTGGTTTTCCTGTCAGTAAACCACAAAACGCCAGCGCTGCCAATGCACAGGAGCCCGAGTCGTGTCTCGTCTGGCTTCCGATGGCGCAGTCGGTTTGTTGAGAATAACGAAAGGACCGGCTCCTTTCGGCCCATTCAGTCGCCCCTGTCCGCCGCAACCGGCTCCCGCCCCATCATCTCCAAAGTCATTCCCTCCTCGAACTCCAGCCAGCTCTCCAGTACGATCGATTTAGCCGCCAAGTCCGCGGGCATCATTCCGGGCAGCCCTGCGCGGGTCATGGAGGCCCCCAGTCCTGGCCCGCTGACTGAGAGCAGCGTGATGTCTCCAGACCCGGTGCCCATGTCCGCGGACAAGGAGATCCTCGACCAAAACACAGACGGCATGAGCCCCCCTGAGGCCCTGCTGAGGAACGGAGCCCCGCCCTCTCCGTCCGAAACACCTGCCTCCCTCCTGTCCCCACCCAACATGTCCTCACTGCTGGACATCTCCCTGCCGGGGCCTCCCGAGGAGGTGCTGTCGCAGGGGGAGCAGGCCACTCAGATCAGCGACTCCATCATTGAGCTGGCCATCAACTCTGCGCACTACGGCGACGGCTCCTCCCTGTCCCCCGCCAAGCTGAACGGCAGCGACAGCTCCAAGAGCCTGCCCTCCCCGGCCAGCAGCCCCCAGCGCAACTGGATCGCCTCGCCCACTCACGACCCGCAGTGGTACCCCAGCGACTCCACGGACTCCTCCCTCGGCTGCCTGCTGTCGAGCCTCATCTCACCGGAGAAGGGCAGGAAGATGCTGCTCACGTCCACGGGCCCCTCCAGCGGGACCTCCCTGCTGGGCCCCAGCCTCCTGGACGGCAGCTCTCGGGACTCCTTCGCCTCGCGGTCCCTGGCGGACGTGGGAGAGGTCGACTCGCAGCTGGTGTGCATGATGAGCGAGAACAGCGTGGATTACATCGCCCGCTTCAACGACCTGGCACAGGAGCTCTCAGTCACCGAGCCGCCGCCACCacccccccctgccccctcGTCCCAGGGCGGCCCCGGCTGAGCACAGGGCCGCCGGGGAGCCGCTCTTCCCCTCGGGGGATCGCTGCACAGGGGGCCATGGACTCGGGCGCCCGTCTGACCGCAGCGCAGGGACCGCAGGAGTGTGCGACGCAAACCGTTTGACCGAATGTGCAATAGATAGAGCCCAGCTGTAGGAAGCCAGAGCTTGGCAGCTCCGAGCCGGGCGGGGAGACCGGGTCGCTCGCAGGCCTGACGCACGGACCCTTCTGGCTCTGGTGGGGGTATATTTGAAGAGTGCCGTGCAACCCCGTCCTGACGCGCGAGAAGTTGCCGCCGCTCTCTTCTTCCCAAACAGGCGAGATCATGACGCCTGACCGGCCACCAGTCCTTCGCCCGCCACCTCCTCCACGCGCTTTTATCAcactgaacaaagaaaacaaaactgttaaaacgCCTCCGTCTCAAAGACTGGCATCTCCGCAgaaatcatttaatttcaaactttttttatttatttaaaagaatgtcACATTTCCATTCGCCTCATCAACAAACCCGCCCGCTCTGTGGCTGGGACTGAATCAGCGAGCGATGCCGTTCTGTTCGATTATTATAGAGATCACCGTCATGGCAGTAGGTTTCCATGTTGCGGCGGCCTGGttactgcagttttatttatgaagagtTTAAGTAAAAAAGGTGAACTGGGTTTTTGCTTTTACCTCCGTTGAAGATTCGGATGATGGCGTGTGATTGCTACCAAAACTAGTTAGTCCCTTATTACACTTCTAGTCTGTCCGGTTGTAGTAAAGCGATCCCAACCTCCGCTTATAAATAGTTTGCTATTTTACGACCAAGACTCCAGTCTTCAGTCCGTGTTCAGGATGTTCAGAAGCCGAGCACATCGGGCCTTTGAAAGCAGTGCCTTGCTTCCTTTTTCAACGGAGATTTTAAATGCGATTGACTTTGACATCGGCGCAACCAGCTCTCGTGGAtaatgttgtctttttaaacTCAGAttctgtaatattatatttcatactAACACTCagtacagattttatttttgtgcagtaCATTAGATTCCAATTATCGGTTTGGCCTCACTTTGTACCTCAGGGGCACCAGGCTGGATTGGCCTCAGTCTCTAATGCACCCCGCTATACAAATCGGTTTTGGAGCCGCTCGAAACGGAGAGGGGCGGTCTCGGGGACACAGAGGGGTCCGATAGGTCAGTCGAAAGGGTTGATCGGTCTGATCAGCTCTGTGATCGGCCAGGCTGACCGGGACCCGGCGAAGGAATCTGTTCTTGGCGTCTGCAGCCTCTCGCTTTCTCTCCCTTACTCGATGTTCAAACGGGCAGACGGTGATTTTACATGACGGAGGTTCAACAGATCTATTTAACTGACCCTGCGGCTAGCTTTGATATACAGTCTGTGCGTTGGTAATGTCTTCATTATCGCTCTAccgtttttattttgaataatccTCAATATTTCTGTGTACCCAACCGGAGTGCACACAGTTTGTCTTTGCTGGAGATTATTTGTCTTTTAAGAAATAGATTTCATTTCTGTCTTTGGCCGTGGGAGATATTGGATTGAGATTTTTTCGAGCAATGAAAAGAATGTAGTACTCCTCCAGACGACGACTCTCATAGCCTACGTGTACTTACATTGCAACGTCTGACAAATCCGCTTCAAGTGCAACTACCTAAGTATTATGACAGAATACGTATAGAATTGTTTTCCTTCAAAGCTCGGGATTTCCTGCATCGATTTAATATGGTAGCTCTGCTTTAAATCTCTATAAACAACAAGCAAACGAACAAAAtactaatacattaaatgaacaTTAATGACATTTGGGTGAGCATAACTCAAGGAGGAATAGGAAAGTGGTGTGTGAATTGGAGACCTAGTTTTCATTATACCACATCGGACTCTCCATGCCAAGCTTGAACCCCCGCCAAGATGGGTTTATGGTGGCAGAAGTACGGAGATGAGTTCTTCTCATTGTGAAACTATTACTTAACTGGTTTCCTTATCATAAATGTTGAtaatacaaacaggaaataaagtCAACAGGAAGGCCTGGGCTGgtcatactttattttatttttttcctctctctaaATGAAGGGAATCGTTTTATTCATGTGGAATAAAGTCAAACATTATGTAcaacagagagggaaaaaaaaaactttttgtgAATACTTAAAAAGCCATATATGATGAACAAGTGTGAACTGTTTTTTTCCTAAGGCATTCCATGCCAAATTGTGACATTGTTATTTTTGGAAGAACCTGATCAGATCCTTCGAAATGTGAATTAGGGACAAATCCTGAGGGAACGCATTGACCCCCAGTTCTAGCTTCATATctaatggtttcatttttatttttatttgattgctttTTGATATTGAGGGATGTGAAATTGAGCCCTGTGTGGTGCAGTAGATTTGTTTGGCAGAACTCTATCTTTCATGTGTCATTTCCCATGCAaagtaaaatggaaaattaacgATTTCGGTAAAAAAAGTCCACTAGTGTCTAATCTGTGTTCATTCAAGCAGCTGAGCTATAACTGAAGAGCCACTTTATCCCTGAATCCAGTTTAAACCACTTTCAGAAACTCTGGGAGTGTATAATCCAGTCCAGTTTTGGGTTGCTCAGCACTAATTAGATCCGGTAAGCCCGGTGTTGCCGCCTGTAGGGTGTTAATGTTTTCTATCAAACTGTCCCACTCGAGAGAAATCCACAGAACGCTCACAAGATTTTGTATCATCATATTTTTAGATGTCGAGGTATTTTCGGTATTGATGTGGATATGGATTCAAGGTTTTCTGGCAAGCTTATTTGTCCCTGACACGTATTGCATTTTGTAGCGAATGCTGCGTCGACACTCCCCAAGTTTGCGTTCGTAGGCAGAAGTGCTGAGAACAGGCTTCTCGAGATATTGATGAGTCGGTAAGATGTGCAGCACAACCGGTCAGATCTATAGCCTGGGTTAAAACCACCGGCGTCTTAAGAATTGCGGCCAGTGTGTGCCGCCTCTCCGACGCACACGTCAAGACACTTAATCTGCCAGAGAGGCTGCCAGGAAAAAGTGGTGTACGTTTCCTCCACAATAGGGCACCTTTAAAAAGGACGTGCTGCCCGTCAGCGTTTCTCTACAGCACCATTCAATATCGTTatgagttttgtttgtttttttacatcccTTCAGACCACAGACACTACAATGGCTCGTTACAATGCACCGCACTGTTGGTGAATTAACACGAGGAGTTCCTGCTAATGAAAAGGATGTTCTATAataagtgatttgtttttgtttaaccctcccccttaaaaaaaaaaaaaaaaaacctcttcatGCATTCAACAAGACCCCTAGTTTGGAAAGTGTTTATGCTTATGTGCAGTAACCCTAAATAGTTCAGAAACTATAAGCACCCATTAAAGAGTGTGGGCTATGAGAGGTTGCTGCAGAGGATGGTGACAGGAAGGTTGAACGGAGTACAGCTAGAGCAGATTCGTACTTGGCGAAACAACTTCTTTATAGAAGCTGGTCACATTCATCGTACTCTTGGCTCCAGGCGTTTGTCTTAAATATAGTGCATGAGAGGGTGCCTGCCCTCTGCtgtatatttaaacagattaaaaactgCATGTTTGTAAGTAAGTGTTAATAGCAAGTATGACCATTGCTGTTTATAATTAATATCCTAAAACTGGAGtaaaaaaaagcttatttatTCTTTTCCTTGGCTTTGTTTTCCTCTCAAAATCATACATGCTAATAATCCTTTCCGAACAAATGtgaatgcaaatgtttaaatatccGAGGTATCGTAGAGGGGTAACGACTCCGATCTCTGATCTAAAGATATGAAGCTACACATGTGGATGATGTTTTCAAATAAGATGAATAACGGggatcttttttatttttatttttggtatggaatcccttctctgtgtttgtacagtatatacaacaATTCCAATCTTCTCTGACCTTTTTTTGTAACATAccgtaaattatttttttggacTATTTATTGTTAAcagttgggggaaaaaaaagtgttttggttgtttaatattccagaaaaaagagaaaatgttgaaCCTCCAGTTTTAAGAGTTTCTCTATTTGTAAAAGGTGTTTTTACCCTTGTGgttataaatacagttttaaaaaaaaagttttcctgttttcttttactCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144143 lncRNA upstream 185448 5095148 ~ 5100938 (+) True G115099
TU144096 lncRNA upstream 471967 4814018 ~ 4814419 (+) True G115061
TU144007 lncRNA upstream 692541 4593460 ~ 4593845 (+) True G114985
TU144005 lncRNA upstream 696312 4589295 ~ 4590074 (+) True G114984
TU143949 lncRNA upstream 899497 4386180 ~ 4386889 (+) True G114940
TU144260 lncRNA downstream 12000 5316453 ~ 5317925 (+) True G115188
TU144281 lncRNA downstream 40034 5344487 ~ 5344947 (+) True G115201
TU144447 lncRNA downstream 741577 6046030 ~ 6046534 (+) True G115331
TU144484 lncRNA downstream 853506 6157959 ~ 6160488 (+) False AMCG00018272
TU144512 lncRNA downstream 1221266 6525719 ~ 6588409 (+) True G115379
AMCG00018241 mRNA upstream 7461 5271199 ~ 5278925 (+) True AMCG00018241
AMCG00018244 mRNA upstream 53029 5227386 ~ 5233357 (+) True AMCG00018244
AMCG00018243 mRNA upstream 63901 5213135 ~ 5222485 (+) True AMCG00018243
AMCG00018242 mRNA upstream 81522 5193217 ~ 5204864 (+) True AMCG00018242
AMCG00018236 mRNA upstream 103323 5171502 ~ 5183063 (+) True AMCG00018236
AMCG00018254 mRNA downstream 76598 5381051 ~ 5392482 (+) True AMCG00018254
AMCG00018255 mRNA downstream 222833 5527286 ~ 5528572 (+) True AMCG00018255
AMCG00018257 mRNA downstream 287394 5591847 ~ 5604149 (+) True AMCG00018257
AMCG00018256 mRNA downstream 318592 5623045 ~ 5633788 (+) True AMCG00018256
AMCG00018259 mRNA downstream 383852 5688305 ~ 5738824 (+) True AMCG00018259
TU144084 other upstream 522481 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 682397 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 1093272 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 2638612 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 2718851 2566084 ~ 2567535 (+) True G114518
TU144414 other downstream 645010 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 2589174 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 2815325 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 3388911 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 3895204 9199657 ~ 9201586 (+) False AMCG00018358

Expression Profile