RNA id: TU144300


Basic Information

Item Value
RNA id TU144300
length 633
RNA type TUCP
GC content 0.47
exon number 3
gene id AMCG00018251
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5356846 ~ 5366754 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGTGTGTTGTGCTCTGCTCTCTGTCAGCTTTACGGGATCATGAATCCTCCTCGCCGCAATTTACCCACCTTCCTAGCCCACTGACTACCAATCCGCGATTTTTTTGGCACACAATATGGCCCAGGCAGCGCAGATTAACGTCCTCGATCTCAACTGTCCCATCAAGGTGGAGCACGACCGAAAGCGGAGGCAATTCACTGTTAGATTAAACGGCTCCCACGACCGAGCGGTGCTACTGTACGAGTATGTGGGGAAGAGGACGGTTGACCTGCAGCACACAGAGGTTCCCGATGCCTACAGAGGGAGGGGGATCGCTAAACATCTGGCAAAGCATGAAGAGAACCTGGAAAACAACAAGGAACACTTGTAGCCAATTCACAAGAGAGGGAATATTGTCTGCTGCTCCACTGTGAATACCACTGGCATTGCTGTGTGCTCGCTCTGTCAGGAGTGTCCGTACTTCATTAAATGGTTGTTTTCCTTCTATTTATGATGTGCCTTTACAACTCAGGACTGGTTATATTAATGCTGTAAATTGAGCTTGTCCTTCTCAGAATCACAGAATTCATAGTAAATGTGAATAAACAcaagtttttctgtttgttgaggtgtattatttgtgtgtatgaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144306 lncRNA downstream 7216 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA downstream 9433 5345894 ~ 5347413 (-) False G115219
TU144282 lncRNA downstream 11712 5344487 ~ 5345134 (-) True G115202
TU144254 lncRNA downstream 52417 5300263 ~ 5304429 (-) False G115183
TU144252 lncRNA downstream 52458 5300263 ~ 5304388 (-) False G115183
TU144336 lncRNA upstream 241079 5607833 ~ 5608069 (-) True G115243
TU144385 lncRNA upstream 380704 5747458 ~ 5748359 (-) True G115277
TU144386 lncRNA upstream 383029 5749783 ~ 5750043 (-) True G115278
TU144390 lncRNA upstream 383338 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 383531 5750285 ~ 5753921 (-) False G115279
AMCG00018250 mRNA downstream 1923 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 13862 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018253 mRNA downstream 34531 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018245 mRNA downstream 72913 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018247 mRNA downstream 87441 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018258 mRNA upstream 241836 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018262 mRNA upstream 374275 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018264 mRNA upstream 416322 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 427763 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 514792 5881546 ~ 5886000 (-) True AMCG00018263
TU144251 other downstream 52417 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 52458 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 68973 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 705234 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 768549 4586062 ~ 4588297 (-) True G115020
TU144435 other upstream 583667 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 1251721 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 1271588 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 2376464 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3873058 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile