RNA id: AMCG00018256



Basic Information


Item Value
RNA id AMCG00018256
length 279
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00018256
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5623045 ~ 5633788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTGCCAAAGACAACCCCTGTAGGAAGTTCCAGGCCAACATTTTTAACAAGAGCAAATGTCAGAATTGTTTTAAACCCCGAGAGTCGCATTTATTGAATGACGAGGATCTGAACCAGGCAAAGCCCATTTACGGAGGATGGCTGCTCTTAGTTCCGGAGGGGACGGACTTTGACAACCCTGTACACCGAACAcggAAATGGCAGAGGAGGTTCTTCATTCTGTACGAACACGGATTACTACGCTTTGCCTTGGACGAGATGTCAGATGACCcctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144281 lncRNA upstream 278098 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 305120 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 522107 5095148 ~ 5100938 (+) True G115099
TU144096 lncRNA upstream 808626 4814018 ~ 4814419 (+) True G115061
TU144007 lncRNA upstream 1029200 4593460 ~ 4593845 (+) True G114985
TU144447 lncRNA downstream 412242 6046030 ~ 6046534 (+) True G115331
TU144484 lncRNA downstream 524171 6157959 ~ 6160488 (+) False AMCG00018272
TU144512 lncRNA downstream 891931 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 984390 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 1020334 6654122 ~ 6678353 (+) True G115439
AMCG00018257 mRNA upstream 18896 5591847 ~ 5604149 (+) True AMCG00018257
AMCG00018255 mRNA upstream 94473 5527286 ~ 5528572 (+) True AMCG00018255
AMCG00018254 mRNA upstream 230563 5381051 ~ 5392482 (+) True AMCG00018254
AMCG00018249 mRNA upstream 318592 5286386 ~ 5304453 (+) True AMCG00018249
AMCG00018241 mRNA upstream 344120 5271199 ~ 5278925 (+) True AMCG00018241
AMCG00018259 mRNA downstream 54517 5688305 ~ 5738824 (+) True AMCG00018259
AMCG00018261 mRNA downstream 114281 5748069 ~ 5750422 (+) True AMCG00018261
AMCG00018260 mRNA downstream 143988 5777776 ~ 5777991 (+) True AMCG00018260
AMCG00018266 mRNA downstream 256386 5890174 ~ 5904487 (+) True AMCG00018266
AMCG00018267 mRNA downstream 301251 5935039 ~ 5948592 (+) True AMCG00018267
TU144084 other upstream 859140 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1019056 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 1429931 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 2975271 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 3055510 2566084 ~ 2567535 (+) True G114518
TU144414 other downstream 315675 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 2259839 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 2485990 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 3059576 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 3565869 9199657 ~ 9201586 (+) False AMCG00018358

Expression Profile