RNA id: AMCG00018258


Basic Information

Item Value
RNA id AMCG00018258
length 2433
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00018258
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5608590 ~ 5612475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACACGAGGCACCATGGAGCGATGCCCAGACACCATGTACCACGACACACTTCTCCGCAAGTGCATCCCCTGCAAGGATGCGTGTGAGCAAAACCTCTCGGAGAAATGCATCCCTTTCTGCGTGGTCCTGCAGTGCGAATCGACACCAGGGAACTACTACGACAAGCTGCTGGACCAGTGCCTGCAGTGCTCGGAGGTGTGCGCCTCCAACATAAAGGAGTGCTCCGCCGTGTGCCAACAGCCGACGCTCGTGAGTCCTATGCAGAGGCCGGTAGGAGAGGGACTCACGGAGCACCACGCCGCCATCATCTACTTCCTGCTGGGCCTGTCCCTCGCTGTCCTCATGTGCACCCTGTCCGTCGCGCTGCTTGTCCTGGTCAAGAAGATGAAGCGCACCAAGATCGTCACTCCCTTCGAGAGCAAGGAGCCCAGCAAGCTGCCCACCAGGTCCTCCAAAGACCACTTGCTCGAGTCCGGCGGTCCGCTGGAGACCGATGCATGGAGAGGGGCGTCCAAGCCCACGGAGACCTGCCTCTACTGCTTCCCAGAGCTCAAGGCGGTCGGGAGAGCAGAGGGCAAGCACACAGAGGCGTCCCCCATCTACCAACAGGCGGCGCCCACCACTCCTCTGATCACCGGCACGGCCATTTCTACCCCCTACGAGAAGGACAGAACGTTTAAGATCATCTGCTCCCCGTCCCAGACCAGCACTTAATGGGTTCGTGCGAGAGAGCGCTGCACGGATTGCCCAACGCCGTCACGGGTTTTGGAAATGCCTTCAAGGTCGGAAAGCGGGCGTTGTGGGACTGTGCCGTATGCGAAAGGAGTTTGGGGAATAATGATTTAGTCCAGCTTTTTGGGAATTAAACGGAAATgaggaaccaccaggactccaGTCTTCATGTGGGAGGAGTCTCGTGTAAACTGCATCAGGGTTTCAAGGTTATTGGTAGCTGTTAGGAGAAAACCGTTTAGCAGATGAAGCTGCATTATGGGACACTTTGCAATTTAacctctcactcacacacacaatcctaaAAGGCTCTTTGGAAGTCTAACCACATTCACGCTGGAGTTTGAATAAGGTGGGCAGAGATAACTTATCCTGAGTATAGACTTCACAGGGTGCAACTAATCAACCGACTACACTGAGGAGGCACTCAACTCTTCAAATATGTAGACAATTGAATAATACAATCGCATCGCATTACACAACACAGATCCAGAGACGAGGGCGTAGTCAACAATATGCGATTTCTTTTTGTTCTCCGACTGAGCCTTTTGCTTCCGCAGCAATCCCAGGTGAAATCCCATCGCTGCGCTTCTGCGTCTGCCTACGTTTGCGCTTTGGAAAGATATGCCCATAAGATGCTCATTCATAATCCTTACAGATCTGAAAGTGTGGGACGACAATATTCGAGGCAGCGGCTTCTGGTAGAtagattacattattgtaatcCAACCACACAATCTAATGTTATTGTAAACCTAGAGCACAGTGGTGGGGGAGATGGGGGGGTACGAGGTGTCACCTGCACCATGTCTATAGTATAACACCCCCTCTCCACCACACAACAAAACCACATTCggtaatgcacattttaaaagataaataaatgaaataacttAGTTTCCTCACTAGTTTCATAAGCCTAAGAATAAAAAGGGATTCCTTTAGCAGTATGTTCCCCAAAGCCAGACGTCTTTATTCCCAACCGCTCTCAGAGCCAGATCACATCTCCATGCCAAGTGGCCTCACGCCTTTATGGGTCAGTCATACAGACAGGCTTAACACAACTGAACACCAACACACGCAGCAGCCACCGTTTCTTTGTTGTAACATTCAGACAGAGCAGGGGGACGCCTGGGGAGACGGGACCATCTCAGAACCAGACTCAATGGTCCTTCAGCTTCTTATGATGCAGGCCAAAGAATAATCAAAAAGGTGCAGCTTTTCATTcgctaaaaaacaaatataaatcaaatgcagTCAGGCCACAATTAATCAACAGAGCAGTGCAGCAGCAGAAGAGACTCACAGATGACAGTAACTGTAGCGCTACAACAGGGCAGCGTATCTTGACTGGATGTTGGTGAACACACCGACTCACTGCACACTTTATTCTTCCATCCCTTCAGAAGTGCTCAGGACTGGATATGTTCTCCCATCTTCTGAAGCCTTGTGTATGAATGTAAGAATTGTTTTCAATGCAGGGACATATTTCTCCTGGCATTATTTCAACTGTGAACCCTTTCGGTATGAGAGGTTATCCTGATCCCAATTCCCTATTGAGTTATACGAGATGagtaggatatatatatttgaatgcatcAGAGTAACTGGGGTATCCGGTGGACACTGTGAAAGAGTTCCTTCAATGCTCACGTTTTgcgaaaaaaataaataaagttgaaaCGATTGTGAAGCACA

Function

GO: NA

KEGG:

id description
K05150 TNFRSF13B, TACI, CD267; tumor necrosis factor receptor superfamily member 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144336 lncRNA downstream 521 5607833 ~ 5608069 (-) True G115243
TU144306 lncRNA downstream 258960 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA downstream 261177 5345894 ~ 5347413 (-) False G115219
TU144282 lncRNA downstream 263456 5344487 ~ 5345134 (-) True G115202
TU144254 lncRNA downstream 304161 5300263 ~ 5304429 (-) False G115183
TU144385 lncRNA upstream 134983 5747458 ~ 5748359 (-) True G115277
TU144386 lncRNA upstream 137308 5749783 ~ 5750043 (-) True G115278
TU144390 lncRNA upstream 137617 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 137810 5750285 ~ 5753921 (-) False G115279
TU144388 lncRNA upstream 137810 5750285 ~ 5754022 (-) False G115279
AMCG00018251 mRNA downstream 241837 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 253667 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 265606 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018253 mRNA downstream 286275 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018245 mRNA downstream 324657 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018262 mRNA upstream 128554 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018264 mRNA upstream 170601 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 182042 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 269071 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 455828 6068303 ~ 6124832 (-) True AMCG00018274
TU144300 other downstream 241836 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 304161 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 304202 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 320717 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 956978 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 337946 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 1006000 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 1025867 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 2130743 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3627337 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile