RNA id: AMCG00018259


Basic Information

Item Value
RNA id AMCG00018259
length 10026
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00018259
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5688305 ~ 5738824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGTACGCTGCCCCAGGGCACCATCAACATGAACCAGTGCTCAGATGTGATTGATGGGGAGGCGCGGACGGGCCAGAAGAACTCCCTGTGCATCCTGACGCCCGAACGAGAGCACTTCATCCGAGCGGAAAACAAGGAGACCATCAACGGGTGGTATGAGACGCTGATTGTTTATCCGCGGACTAACAAGCAGAACcttaaaaagaagagaaaagtgGAGCCACCTACTCCTCAGGAGCCAGGACCTGCCAAGGTGGCGGtgaccagcagcagcagcatagCTTCTGTGGAGAAGGTGCCCACCTGCAAGTCCACCCTGTggcaggaggagaggagagcgaGGGGTGGCATCCCTTGCAGTCGAAGTGCCTCCTGTCTTAGCCAACTGAGCCAGGCCAACCACTCCCAGAGCAGCACGTCCTCCACAGCCAAAGAAGAGCAGGCCGTGGTGAATGGCGGACGCAAGGCTCGGGTAGAGAGCGGCTACTTTTCCCTGGAGAAGACCAAGCCGGACCCTCCACCCCTGCAGCAGCTCCCTCTGGCCACCTCCTCCAGTCCCGGCGGCCCCGACAGGTACAGTTCCCCCGACACGGACCCCCTGACCTCCCCGCCCTGCCGCTCCCCCGACTGCGGCGGCGGCGACCCCTTCCTCTCCCCAGGGCCGCTCTACTCCAATGGCTCCTCCGCCATCAGCTCCTCGCAGAGCTCCCTGGACTCGGAGGTCAGCAGCACCACACAGACCAGCGGCGCCAGCTGCGAGGGCCAccggggcgggggggtggcCGGTGGCGGCGGCAGTGAACGAGCGGGGCGCATGGGCCGCAGTGCCAGCGACTACGCCTGCCTGGCCGACGTGCCCAAAGCCAAGAGGATAAGCCACCGGGACGCCTTCCGCGCTGAGAAGAAGCGGCAGGAGCAGAGGTCCCGTACGCGCAGCCCCGGCAGGGAGGAGGTGGCCAGGCTGTTCGGCCAGGAGCGCAGGCGGTCCCAGGTGATTGAGAAGTTCGAGACGGTGGACTCGGAGAATGCGGAGCACATggagaccagctcctcctccgaGCAGCCCGCCCTGGCAGCCAGCGTGGCTCGGCAGGGCCGCAGCGAGAGACGCCACTGCCCCAAGAAACAGGAATTCTCTCTGGACAACTCAAGCGAAAGGTCTATGCCCGACGTCTCCACCTCCACCATCTCCCCGTACCGCCGAGCCAAGTCCCTGGACAGGAGAGCCACCGAGTCCTCCATGACGCCTGATTTATTGAATTTCAAAAAAGGATGGATGACCAAGCTTTATGAGGATGGGCTGTGGAAGAAGCACTGGTTTGTCCTGACAGATCAGAGTTTGAGGTACTACAGGGACTCCATCGCAGAAGAGGCAGCAGATTTAGATGGGGAGATTGACCTGTCCACTTGCTATGATGTCACAGAATTCGCAGTCCAGAGGAACTACGGGTTCCAGATTCTTACTAAAGAAGGCGCCTTCACCCTCTCTGCCATGACCTCAGGTATTCGACGCAACTGGATTCAGGCCGTCATGAAGAATGTCCGTCCCACAACCGCCCCTGATGTCACCAGTTCTCTCCCCGAAGAGAAGGCCAAGGCAGCCTTCGTGAGCAGCCAGGCCCCCGCCGAGACCCCCGAGAGCTCGGCCGGCACTGAGGCAGAGGGCAGCAGCTCGGAGCAGCGGCGGAGCCGGGTGCGTGAGCGCAGGAGAGAGGGCCGCTCGAAGACCTTCGACTGGTCCGAGTTCCGGCCTGCGCAGGAGAAGGGGGATGAGGAGGGGGACGCGGCCTCTTCCCCTTCGCCTCCCAGCTCTGCCTCCAACGCAGCCCTCCAGGACCCGGGCGATGCAGGGGAGCTGGAAAGGGAGCGGGCGCGGCGCCGGGAGGAGAGGAGGCGGCGCTTTGAGACGGTGGATGGCAGCTCCGAGGACAGCAGCCGCATGGAGGTGGATCGGTCCCCCGTGTCGTCGTCTGTGTCCCCCGCATCGTCGTCTGTGTCACCCGTGTCGCCCTTGTCCTCCatctcaccccccaccccagaggATGGCAAGGGCCCGGATGTCCATGTGGAAATTGAGCAGCGCTGGCACCAGGTGGAGACCACCCCCCTCCGAGAGGAGAAGCAGGTGCCCATCGCCACGTTGCACACCTCCGAACCCGGCGCAGACCGGCTGCCTCCCCAGGAGCTGGCAGCTCTGCTGGATAGAGagCTCGAGCAGACCCAGAAGGAGCTGGCCAAGCTGCAGGAACAGAACAGCCTCCTCCAGGACCAGCTGAAGGAGGCGCGGGGGCGAGAGCTGAGCGCGCGAGAGGGCTACGTGCTACAGAATGACTCCTCAGCTTCACCGACGGGCGCATGGCAAAGGCTACACAAACTTAACCAAGACCTTCAAAATGAGCTGGAGTCCCAGAGCCAGCGCCAAGACCTCACAAACCAGCAAGTTCAAGCCTTGAAACGGAACTACAGTGAAGCCAAGGACGTCATCAGACACCACGAGTCAGAAATCCAGAGTCTACAGACCAAACTCAACAATGCCATGGCCGAGATTCTGATAAGTGAGCAAGCAGTGGCCAAAATGAGGAGCGAGCTGAAAATGGAGCAGGAGAAGTTCAAAGAGCGCATGGAGGAATGGGAGCACAACGAACAGACCCTTCGGACTCAGCTGAAAGACAGTGAGGACAGACTGAAGGATGTGGAAGCCCTGTTGCTGGAGAAGAGCCAGGCTTTTAGGGATCTGGAGAGGCAACAGGCCCTGCAGAGGGACTATCTTAAGGAAGTACAGAGGCTGCAAGATAGGCTTGCAGAGGTTACAAACCAGCTGATAACTACTGAACAAACACAGACCTTGAAGGAGGAGAGGTTTCAGAGGAACTATGAGATGCTGAAGGAGAGtcaggagaaggagaaggagtcTCTTACTCGAAGGCTGGTGGAAGCGGAGGGGAAAGTTAGAGAATTGGAGGACAGACTTCAAGAGGCAGAGCAGCAGGTAGAAGACCTGCTGAAGGAGAAACGGGCTACTGGTCTGGAGAGCAGCGAGGTGGTGCACCAACTTGAGGAGCAGCTGGCCATCAGGACTTCCACTATCCAGAAGCTCACGGAAAATATCCGGGAGTTGGAAGAAGAGAAGGACCAGTTGACCTGTAGGTGCCAAGAGCTGATAAACCAGATAACAGAGGCCGACAACGAGGTAGCCAAGCTCCAGTCTCGACTGAAAACTGAGGAGACTGACTACTACAACCTGGAGCACTCCTATGAAAAGGTGTCGGAGCAGTTCCAGAAGATCAACAAAGTTCTACGAGAAAAGGAAGAGGAGATCAGGGAAGCAAAGGAAATGTATGAGAGGCTGGTGGAAAAGAAAGAGCAGGACCTCAATGAGGCACTGGTAAAAATGGCTGCTCTGGGGAGCAGCTTGGAGGAAACGGAGATGAAGCTGCAAACAAAGGAGGAACTGTTAAGCAAGATGAGTCATGACGAGATGGATAGTGACCCAGAGAAGTTTATTTCAATTATCCATTCGCTGGAGACCAAACTATACGTGACCGAAGAGAAGCTCAAAGAGATCACGTTAAAGTTGGAAGCACAACAGGGCAGACAGCTTGAGTCAATGATCGAACGCCATAGCCAGTGGGCAAAGACTGAAACTGAGCTCCAAGGGCAGCTCAGCGAAAGTCTGTCCAAAGTAGACAAGCTGACCACACAGCTCCAGGAAGAAATGGACAAGAGAAACACATTTGCTCAGGAAACCAGCTGCTGTATCAAAGCAGTGAACACCAAATATGAAAAGGCCCTCGCTTGTGTAGAATCGAGCAGGGAGAAAGTCCACTCCATCATTAAGAGCCATAAAGAGGATAGTGCAGATCTAAAGCTTCACACATTATCAGAGATCGAGACACAGTTAGTTAATGCAACCATTTATATTAGGCAGGGAGGAAGCTCATTAGTAGAGCAGCAGCTTAAATACCAAGAGACACCAAACAGGGAGCTGAGCGAGAGCGAGATGACCGACGAGGACAGGATCAAGCTGTTTGCTAAAACCTTAGCCTTTGAGGCTTTGGTTTTAAACAAGATGGCATTCTCGATACAAAATCCCAATTTCGACCTTTTGCAGGGCCTTAGCGCAGTCCATCAGGAAGCAGAGAAGTTGAAAAGAAGCGACGAGTCCTACGTAGCGATTGTATATGCAGATGTCTTAACTCAAAAGCTGATGTTAGAAAGTGAGTTTTGGGCCGAGGTGGAGAAGCTGAAGACGCAGTTTGAGGAGAGGGAAGGCGACTTTGACAGGGTAATTCAAGAGGTGACAGATGAGTTTAGTGCAGAACAAGGTAGAACCCTGGCCGATATCAGTCCTCCGGAACTTGCTCCTTATgtggaacaaattaaaatggaggaGGCTCATCATTTAGCAGAACAAATCATTGACCGACACCTCCAGACAGATTTGCCTTCCTGTAGCATCGATGCTGTCGATTCTCCACACATTGGACGGGACAAACTAGCAGAGGAGCTGAAACGGCAAGCGGAGATTCTCCACCATTTATCCCAAGAAATAGAGGCCACTTGTGATGCAGAGGACAGCGATGTCCCCCACAGGTTAATTGACATTTCCCGTGTACGGCCTTGCTACACACACCCCAGCAACATGGACAACAGTTCGCTCTTCATGCGGGAAGCCATGGTTCAGGCTCAGATCGCCTACGTGGCTTGCAAGCTAAGAGCGGACCATGAAAAAGATTTACAGCAGTGCCGGGACGCCTGCCAGAGCATGGACATTCTGTGTCAGGAACATGCCAGGAATGTGAATGCCATCCGTGATCGCTACGAAAGCTCCCTGCAGGAGGAGCGGCAGAGCTTCTCGCAGGCAGTTTCTGGCCTCAAGGAGGAGAACGAATCCCTGAGAGGAGAGGTGTCCCGTCACATGTCTGAGCTCTCTCTGCAGCAGGAGCGGCTGCAGCAGACAGAGCAGCGCTTCAGACAAGAAATGGAGGAGCTGAAGCAACGGTACCAGCAAGAGCTGCAGCAAGCGGAGGAGAAACGGGCGGCAGCCGAGATGGCCATGAAGGACAAGACTGCAGAAAGCCAGCGGAAGCTCGAGACCATACTGTTAGACATCGAGAACATGGAGGACAGGCACGAAGAGCACGTGCAGAAGCTGGAGGACAAGTTTCACTGCAAGATACAGGAACTGCAACGGATTCACGAGGAGGAAATGCAGAGGTTGCACGGCCACTACACTCAGACCATCAAAGCCATGCAGGAGACCCTGGAAGCATTGAGGTCCAGGCACCCAGAGGATCCGCCCGTCGAGTCTTCCACGCCTCCCCAAGACTCCTGGCCCATGGAGGAGGCGGACGGGACGCAATCTCCAGTCAGAAGGATGGAGCTGGATTCCATGACTGTGCTGAAGGACAGGATCCAAGAGCTGGAGACGCAGATGAACGTCATGAGGGACGAGCTGGAGCACAAGCACCTGGAGGGGGACGTGTCCAGCCTGAAGGAGAAATACCAGAAAGACTTTGAGAACTTAAAGGTTTCTACACATTTTGTTCTAGTCTTTAGACAGGCCACTTGCGAGCGGGGCTTCACAGCCATGGAGGAGACGCACCAGAAGGTCATCGAAGACATCCAGCGGCAGCACCAGAGGGAGGTGTGCAAGCTGCTGGAGGAGAGGGAACGCCTACTGGCTGAGGAGACGGCTGCTACCATTGCTGCTATCGAAGCCATGAAGAACGCGCACcgggaggagctggagaagaaCCAGCGCTCCCAGATCAGTGGCATGAGCTCAGACATCGACGAGCTGAGGAGACAGTATGATGAGGAGCTGCGGTCCATCTACCGAGAGCTGGAGGTCCTGTCAGAGCAGTACTCCCAGAAGTGTCTGGAGAACGCACACCTGGCGCAGGCCCTGGAGGCCGAGCGGCAGGCCCTACGCCAGTGCCAGCGCGAGAACCAGGAGCTCAACGCACACAATCAAGAGCTGAATAACCGCCTGGCATCGGAGATCACCCGACTACGGTCCTGTATCACTGGGCAGGATGCCACGTCCCCCCTCACGCATGGCAAGGACATCTACGAACTGGAGGTCTTATTGCGGGTCAAGGAGTCAGAAATCCAGTACCTTAAACAGGAAATCCACTCCCTCAAAGACGAGCTCCAGTCGGCACTGAGGGACAAGAAATATGCCACGGATAAGTACAAGGACATCTATACAGAACTGAGCATAGTGAAAGCTAAAGCCGACTGTGACATCACCAAGCTAAAAGAGCAGCTGTTGGCGGCCACCGAGGCTCTGGGCCAGAAGACGGCGGACAGCACGGCGGTGTCCGGATACGATATCATGAAATCTAAAAGCAATCCTGATTTCCTCAAGAAGGAAAGGTCAACCATCAGCCGGCAGATTCGAGGGGTGAGGTCGAAGAGCCTGAAAGAGGGTTTGACAGTGCAGGAGCGTCTGAAACTGTTTGAAGCAAGAGACTCCAAGAAGATCTGAGCACGGTGCCCCGGTGCCATCGGGACTCAGCTCTCCCTGGTCTTCTCTGCAGGGCTGTGGCCAATTTCGACAGCTTATGAACGTGCGATTCATTTCAAACCcattaaacacacactcaacacataCAACCAGTTGGTTTTTTAGCAGAGGGGTTCATCGGTGGCCATAAGTTTACCCTCCTGTCTTTTCAGTGCAAATTGCCCACATACTATGACTATGTAACGACAATATCTGTGAATAAGTAAAGAAGATTATATATTCCTTTAAGCTTGGGTTTATCTTGGAAATTTTAAATCTGAGTAAGAATCGAGAGACAGAACCTGTCCAGTgaagtttgtgttattttgtgacGCATGTTCATTTCAAAGTCAGAGATTTTACACAACCGGTAGAGCCATTGATATGAGTGTGTCGAATTATCTTTGCATTGAAAAGAAAGGAGGATGTGCAACTTTTTGTCCCCTACTTTGACCAGTCCTACACCGTGTCCATCATTTTTCTGGAACTGTTTCACAGATACACTCGTTATTAACTGGCCATTTCTCCAGTCTCAACATCTTCCTGCTGACTGCTTTTGTGCATTTACGTGACGCTTCCAACCTGTGGGAATCCATACATATTGAATCTGAAGTCTTCCTgcacatgattttattttactctaaaGAGATTTCCAAAAGGAACTCGGTTGATTTGATACATTTGCAAAAACGTTTTCCCCGGACAATGGAGCTCTGACGCTGAAGGATTGACATccgccttttattttttcttttgtctccaTTGTTATAATTTAGGAATACAGTCTCCATGACTCTTGTTTTggacatatttattattatttattaaaaaggaaaacacataaGATTGGGATTAATTTTTTCGGGTGAAATAACAGCtgtacaaaaatgaaagaaaggaagaaaacagtTATGATGAGCAGCTGcatcaaaataaatctgaaaccATGCAGGAAAGTATGTGTGCCCAGTCCCttaaagcagtttattttccaGGAAGTCTTGATGATAAATTGAAAAGTCTTTGaaatctttgtttgttttttggcccTTGTGATAATAAGGCATATTATTACTATAGTAAGTTAACCAATCAAAATTGAATGACACGGCATTACATTTTACCAGAGCTTACCCAGTAAGTATGAACTCCTGCGGTGTTCTCTCCAAACCCAGACTGATTTACTAAATCCGGgagaattcatgttttaatctcataACAATCTAGAATGATgtgagagaaaataatattctaccaaaaaaccaacaaaaacagaaaaggattaatgcattttgatttagtttGCCTTTCCTTACTTATATGCCAATAAAAGCGGTTCAGTCAGCCCTGTCCCAAGGAAAGTATTtgcaaacagttttaaaaattctatcagtatatattatataatattttaagtgtAAAGCTTGTAGCGGTGGAAATATAATGTAGGGGCTGCATCatatcaaattaatattgtaaatcaATCTAGGGGAAGGGTAGAATAAAATGATTGTGGTAATATTAAGAGTATACTGAATCCTGAATTAAATCCATTCTAAACCTATCTAATAATTTTTTAACGCTGCTTAATGCACTGCAGGGAAACGATTAGTATGAAGACTACACAACACAGATAGTGTTCGTATCGGTTTTGTTGTGTGCCTCTTCTACGTTCTGCCAGAACTCACAGAGACAGTGTTAACGCACATTAAACCATGTTGATCTGCGTCCTCTAGAGGAGTCGACGCTGTCCGAGAGTAGCACAGGTCGACGAAGCTTCCATTCGGAGTGCTAATGGGCTAAAAGAGCATTAACGGTGTCCCCTCTCCATGCCAGGCCGTCTGACACACTTACTGCGTAAACTGCTGCTCCACTCACTCAAGCTCTTCGCTTCACAGTTATGAAATGTTGTCTAActttctaataataaaaaaggaaactgtaTAGTATTCAAAGCACGCcttgtaaatatttgttacaCAGAATCTAGTTTTTGTGATTTTATCTGTTTTAAATCTATATCCTGCTACTagcactataaatatatatatattttttattttggtttgaatGTATTCTCTGAAAGAGGCAACGCGTCTCTGACTCGGACCACTTCTGAAATTCAAAGTCTTGGCAGAGGACCCCACTGTGCACGTCGCCACAAAAGGCTCTTGTGTTCGAAGTGGCGTCGACATTATACTGTCCGAAGCGCGTGGGCGGGGAAATCCGTGCTTTGGGATTTTATTGGAAAGCGAGATCCTGAACTCTAAACGTTCTGCCACAGATCTGTGCTTTGCTAACGATTTGTGCTGTGTGACCCGTCACTGGCTGACCCTTCACTCATTCACAAGCAAGGCAATATGGCATCATAATATGGATAATAGATTAAACAGGAAACACAGCCACCAAGGTCACTGATTCGCAGTCTTCTAGTGCGGTGAGCTAATGATTAACCATCTCCGAGTGGTGGTCTGCAAGGGGGATTCCCCGAATCACCGTTGAATCCTGAGAAAGTTTGCAGCACATCGCAGTGTTCAAGGGTGTGAAATTACAGAGCTGCTCGTTTTAATGTGTAAACGTGTGGCTTTTTGGCCGCCAGCTGCCATAGTTCTAGTCTGTATCACCTGACagttaattccttttttttacatttttcttttgcaattaaGCTTAAAGGATTTTATTTCTAGTTCTGTATGTGGTGCTTGGGAATGATACAAGTGAAGATTTTGCAGTGATATTTacagcaaatacatttgaagatctttttctgtttagtttgtgtgtgtgtaagctaAAAATGAAGCGTCTAGGATGGGACATTACAGAGAATGACATGAATCCTAAACGTGCACCTTTGTCTGTGTGTCGAGGAAACTCAGGaagttgaaattgaaatgtgtatCGCTACTGCAAACACAAGCATCTGAGTGAAAATGGGAAGATTCTGCATCTGCTGTCGGGCTCTTTAGTGTTTTATGATCTTGAGAATTAAGATTAAagttatgttattgtttttttcagctttagtagtatattgttttttgcagttttgtgtCCCTActtttctgctgttgtttttatttgtttttgtatatctTCTGGTAATAAGTTTTGAATGCCCCAGATGTTCAAGCCTTCAGGAATGGGGAGTTCAGCaagttgaaatgttttaaagcgTCTGATCATTATTCAGTGACCCTCCCATCTTCCAGAAGTGAGAaatctcctctcctcttctgaCACGatacatttgaatttcagaAAATGGTCGGGTCTGATGTGTCAGTCTCCACATGAAACAGCTCGGTGACAGTGTTGTCCTGGTCTACTTTATTTTATGCCAATTAATTGTTCATTGTAATTGGAAACCTCGCTCatcacatatttatttctggacTGTATGGCTTTTTATTAGATTTGTGGTTTtagttgtcatttttattttgtaaatatgaaaaCCCTACTTTATATAATCtataacagtaataaaatatttttgcaccatctaca

Function

GO: NA

KEGG:

id description
K23792 MPRIP; myosin phosphatase Rho-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144281 lncRNA upstream 343358 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 370380 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 587367 5095148 ~ 5100938 (+) True G115099
TU144096 lncRNA upstream 873886 4814018 ~ 4814419 (+) True G115061
TU144007 lncRNA upstream 1094460 4593460 ~ 4593845 (+) True G114985
TU144447 lncRNA downstream 307206 6046030 ~ 6046534 (+) True G115331
TU144484 lncRNA downstream 419135 6157959 ~ 6160488 (+) False AMCG00018272
TU144512 lncRNA downstream 786895 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 879354 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 915298 6654122 ~ 6678353 (+) True G115439
AMCG00018256 mRNA upstream 54517 5623045 ~ 5633788 (+) True AMCG00018256
AMCG00018257 mRNA upstream 84156 5591847 ~ 5604149 (+) True AMCG00018257
AMCG00018255 mRNA upstream 159733 5527286 ~ 5528572 (+) True AMCG00018255
AMCG00018254 mRNA upstream 295823 5381051 ~ 5392482 (+) True AMCG00018254
AMCG00018249 mRNA upstream 383852 5286386 ~ 5304453 (+) True AMCG00018249
AMCG00018261 mRNA downstream 9245 5748069 ~ 5750422 (+) True AMCG00018261
AMCG00018260 mRNA downstream 38952 5777776 ~ 5777991 (+) True AMCG00018260
AMCG00018266 mRNA downstream 151350 5890174 ~ 5904487 (+) True AMCG00018266
AMCG00018267 mRNA downstream 196215 5935039 ~ 5948592 (+) True AMCG00018267
AMCG00018268 mRNA downstream 213445 5952269 ~ 5963749 (+) True AMCG00018268
TU144084 other upstream 924400 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1084316 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 1495191 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 3040531 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 3120770 2566084 ~ 2567535 (+) True G114518
TU144414 other downstream 210639 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 2154803 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 2380954 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 2954540 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 3460833 9199657 ~ 9201586 (+) False AMCG00018358

Expression Profile