RNA id: AMCG00018262


Basic Information

Item Value
RNA id AMCG00018262
length 1182
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00018262
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5741029 ~ 5745704 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTATGCTCCTTGTACGCTTCTTCTAGGTCAAATGACACAACTATGTGAGCTGATCAATAAGAGTGGAGAGCTGCTGGCAAAAAACCTGTCCCACCTGGACACTGTTCTGGGGGCCTTGGACATTCAGGAGCACTCGCTGGGGGTGCTGGCAGTGCTGTTCGTAAAGTTTTCAATGCCAAATATCCCCGACTTTGAAACGCTATTCTCGCAGGTTCAGCTCTTCATCAGCACTTGTAATGGAGAACACATCAGATATGCAACAGACACGTTTGCTGGCCTTTGCCATCAGTTGACAAATGCGCTGGTAGAAAGGAAACAGCCACTGAGGGGCGTTGGCATCCTAAAACAGGCCATAGACAAAATGCAGATGAATACGAACCAGCTTACCTCAATCCATGCAGACCTCTGTCAGCTGTGCTTGTTGGCGAAGTGCTTCAAACCCATCCTCCCATACCTTGAACTGGACATGATGGATATATGTAAAGAGAATGGCGCTTACGATGCGAAGCACTTTCTGTGTTACTACTATTATGGTGGAATGATCTACACCGGCCTGAAAAACTTTGAAAGGGCACTCTATTTTTATGAACAGGCTATAACCACTCCAGCCATGGCAGTCAGTCATATTATGTTGGAGGCATATAAAAAGTATATCCTGGTCTCCCTCATCCTGCATGGCAAAGTCCAGCAGCTTCCCAAGTACACGTCACAGATTGTGGGACGGTTCATCAAGCCTCTAAGCAATGCCTACCACGAACTCGCACAGGTCTATTCTACTAATAACCCAGCTGAATTGCGTAACCTGGTGAGCAAGCACAGCGAGTCCTTCACACGAGACAGCAACATGGGTCTGGTCAAGCAGTGCCTGTCGTCCTTATACAAGAAGAACATCCAGAGGCTAACCAAGACGTTCTTGACCTTGTCCTTACAAGACATGGCCAGCCGAGTGCAGCTCTCCGGGCCACAGGAGGCGGAGAAGTACGTCCTGCACATGATAGAAGATGGTGAAATCTATGCCAGTATTAACCAGAAAGATGGCATGATGCTGAAGTGTATAGAACTGGATGAGAAGCTAAAATCCATGGATCAGGAGATCACAGTAAACCCACAGTTTGTACAGAAGAGTATGGGATCACAAGACGATGACGTAGGAAGCAAGACGTCGAGTTACTCCTGA

Function

GO: NA

KEGG:

id description
K12177 COPS3, CSN3; COP9 signalosome complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144336 lncRNA downstream 132960 5607833 ~ 5608069 (-) True G115243
TU144306 lncRNA downstream 391399 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA downstream 393616 5345894 ~ 5347413 (-) False G115219
TU144282 lncRNA downstream 395895 5344487 ~ 5345134 (-) True G115202
TU144254 lncRNA downstream 436600 5300263 ~ 5304429 (-) False G115183
TU144385 lncRNA upstream 1754 5747458 ~ 5748359 (-) True G115277
TU144386 lncRNA upstream 4079 5749783 ~ 5750043 (-) True G115278
TU144390 lncRNA upstream 4388 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 4581 5750285 ~ 5753921 (-) False G115279
TU144388 lncRNA upstream 4581 5750285 ~ 5754022 (-) False G115279
AMCG00018258 mRNA downstream 128554 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 374276 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 386106 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 398045 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018253 mRNA downstream 418714 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018264 mRNA upstream 37372 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 48813 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 135842 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 322599 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 383009 6128713 ~ 6155791 (-) True AMCG00018289
TU144300 other downstream 374275 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 436600 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 436641 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 453156 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1089417 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 204717 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 872771 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 892638 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1997514 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3494108 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile