RNA id: AMCG00018263


Basic Information

Item Value
RNA id AMCG00018263
length 3233
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00018263
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5881546 ~ 5886000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGAGGACGGCACTTACCACTGCATGAAGCGGACACTTACCACTGCATGAAGCaagcaaggaggaaaataaaaagccaggAGAGCTCCACATTGACCACCTACCGGATTTGATCTTTGTTTGTAATCTCTGTTTATAATGGAAAGCTGAAACACGCATGCGTTCTTATTCCCAGTACAATCTGTTACATTGTTGCTAAACTGCTGGCCGCGGCTCAATAATATCCATTTGCTTGTCAGAGAAAGACACGCGTTTGAAAGCCCGGTTTAGGATCCTGGAGCCCCACCTCATGCTGAAAATGACCGAGGAGCACGACAAGTCCCTCGCCGAGCCCCCCTGCAGCCCAGCGGGCACCTCCAGCTCCCTGTCCCAGGACGACTCGGACTCGGACGCGCCGTGCTCCCCGACGGGCTCGGACGGGCACGGGCAGTCCCGGCTGGGCAAGAAGCTGGAGGGCGAGGAGGACGAGCGCTTCCCCGCCTGCATCCGCGACGCCGTGTCCCAGGTGCTCAAGGGCTACGACTGGTCCCTGGTGCCCATGCCGGTGCGCGGCAGCGGCTCCCTGAAGAACAAGCCGCACGTCAAGAGGCCGATGAACGCCTTCATGGTGTGGGCGCAGGCTGCCCGCAGGAAGCTGGCGGACCAGTACCCGCACCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGCTGTGGAGATTATTATCCGAGAACGAAAAGCGGCCGTTTGTAGAAGAAGCCGAGCGCCTGCGAGTCCAGCACAAGAAAGATCACCCGGATTACAAGTACCAGCCCCGCAGGCGAAAGAGCGTCAAACCCGGCCAGAGCGACTCGGATTCGGGCGCCGAGCTGAACCACCACCCCTCAGGGCAGATGTACAAGGCAGAGCCGGGCATAGGGGGCATGACAGACGGGCACCATCACCCTGACCACGCAGGTCAGCCCCATGGGCCACCaactccccccaccacccctaAAACAGACCTACACCACGGAGGCAAGCAGGATCTGAAACAGGAAGGGAGACGCCTCCTGGACAACGGCCGGCAGAACATCGACTTCAGCAACGTGGACATCTCGGAGCTCAGCAGTGACGTCATCAGCAACATGGAGGCCTTTGACGTGCACGAGTTCGACCAGTACCTGCCGCTGAACGGGCACACCGCGCTGCCTTCGGACCACGGCCACGGACAGAACCCCGCCGCGGGGGCCTACGCTTCCACCTACAGCCACTCGGGTGGAAACGGCGCGGCCATTCAGATCTGGAGTCACAAAAGCACCACGTCCTCCTCCTCGCCCGCGTCCAGCAGCGAGGCAGGTCAGCAGAGACATATCAAGACGGAGCAGCTCAGCCCCAGCCACTACAGCGACCATTCCCACGGCTCCCCGGCCCACTCTGACTACGGCTCGTACCCCAGCCAAACCTGCGCCTCCTCGGCCGCCTCTGCGTCGGTCGCTGcctccttctccagctcccAGTGTGATTATACAGACCTTCAAAACTCAACCAACTACTACAACCCCTACTCGAGCTACCCCTCCAGTCTTTACCAGTACCCTTATTTTCACTCATCACGGCGCCCCTATGCAACCCCCATCCTCAACAGTCTGTCCATCCCTCCGTCCCACAGTCCAACAGCCAACTGGGACCAACCGGTGTACACAACTCTCACCAGGCCATAGAGAGTGGGGGACACGGTGCGGGACACTTCTCCAATTGCTAATAAAATGTCTTAAGGACTTTTGAAAGTTGCCCACAGCTTTCTGCACTAATGAAGGAATAGAATACAGTAGGTGGAGCGCTGTGccaatttggaaaataaaaaataaaataaagtgcctGCTGATTTAATATGATTGATCAATtttttaggaagaaaaaaatttTCCCTAGGCTTACTTGTTTGTGGCcatgcatattttgtttttctatgaaGAAATGGCTATTAAATTGTTTGTAAAAAGACAATGGTATGAATCCTCTGTGAGGACTATCTGAAGTTCACGGATATATACGTACATGTGTGtagttgtgtatatatatgtatgtgtgtgtgtgcatttctttctttttttttaaatctaaaatattcaATAAGGTGTATAAGACAATGTCGTGCACGTAGTTTTGAAACGGGCGATTTTATAAAGCACACTGGGACCAATTCTGTGATTTGGATGAAGTAATCCTCATTCACGGTTTGCTGCAGTTCTAGCAAAGCACAGGAACTCCGTAGTTGGACCAATCCTTTCAGTTTAATGTGTCAATTTATCAAAACAGGGTTTAACTCTCATTCTGGAAGTAAACGGTGTTGTTTTTGTATCCTAAGTTCATGTTTGGAATTTCTTTATtgctattaattaaataagggTATGATAAATTGTGttaggaaaataatgtgtaGTGTTTTATGTTGGAGGATTTTCACTAATTCTGCCAAAGTGGTGATTTAACCACTTTTTGCTTTGTAATGATGCACAGTACACACCGCCATTCCAGATTATAAAAGACAATATGATGTCCAGCAGCAACAGAAGTTTACTTTGCCGTTTTCCAAATTTATACGTTGGCAACCACAAAAGGGTTAAAGGAAACGGGTAAGATAATACAACACCTGCTTTGAGTGACAGACCAACTGCTGGGCGAGCGTTAAATCCAAACGGAAGGCCGGCCCTGCTAAGTTGTTACATGGTTTAAGCACCGTGGATGTTTTCGCTAAGGTAGCCAGattttatgaaaacacaaactcagacttattatattgtgttttccTCTCCCCAGGACCTGATTTTAGTCGTGAAGCTGTGAAACTAGAACTCTCCACTACATAGACAAACTTTTGGGATTACGTTAATAACATTCAAGATAGTAAATGTAAAGGGCTGAAGACACACAAATTCCTTCTGTAAACAGCTCTTTGTTTTTTACTAatacgtgtgtgtgcgtgcgtgtgtgcgtgttgtatttctactgttttttttattgtatgccGGGCATATAATAACTTTTTACACATGTAACACTAACTTGTGCCTTCAAAacgctttttttgtttttctaaaaatgtattttcgaATTGTCTTTTTCAGAAAGTATCTGAGCTGCATGTTTTATGCAATCTATTTTCTCTATTAAATTTGAAAGAAGTTCACTgtaaacaatctttttttttctttttctatgtcTTACTAGAAAATTCTCACAAGCACTGCTAACCTTTTGTGCAGGccc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144388 lncRNA downstream 127524 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 127625 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 127625 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 131503 5749783 ~ 5750043 (-) True G115278
TU144385 lncRNA downstream 133187 5747458 ~ 5748359 (-) True G115277
TU144448 lncRNA upstream 160030 6046030 ~ 6046618 (-) True G115332
TU144532 lncRNA upstream 331528 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 1115802 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1848097 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1855974 7741974 ~ 7742210 (-) True G115579
AMCG00018265 mRNA downstream 72703 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018264 mRNA downstream 96646 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 135842 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 269071 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 514793 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018274 mRNA upstream 182303 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 242713 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018292 mRNA upstream 272280 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 333973 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 423369 6309369 ~ 6464857 (-) True AMCG00018293
TU144300 other downstream 514792 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 577117 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 577158 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 593673 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1229934 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 64421 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 732475 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 752342 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1857218 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3353812 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052299 False 3419 mRNA 0.52 3 NC_007114.7 62521041 ~ 62527696 (-)
grasscarp (Ctenopharyngodon idella) CI01000047_04840115_04844233.mRNA True 1773 mRNA 0.48 3 CI01000047 4839563 ~ 4844233 (-)