RNA id: AMCG00018265


Basic Information

Item Value
RNA id AMCG00018265
length 1913
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00018265
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5794517 ~ 5808843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGCTGCCGTTTAATAACTTATTCGAAGCCTGTTatatttcattctttttaatgGCGTGGTCTGTCTTTCTTGCAGCATTACGGTGGCTATGACGTCCCAGCCGAAGGCAGAGGTGATGGGGACGTCTCCGGTGTTTTATTGTGGAGTGGTGCTGCTGGTCACCGGCTCTGTCCTTGTAGTCAGCAGTTTCTATGCTCTGGGATTCACGGGAACCTTTTTAGGTGACTATTTTGGGATCCTGAAGGAGAAGAAGGTTACAGGATTCCCCTTCAGTGTCTTGGATAACCCGATGTACTGGGGGAGCACAGCTAATTACCTTGGACTGGCACTGATACCATTCACAGAGGAAATCTATCGGCAGAAAATCAGATGCTCAAAGAACAAATAAGtacatctgtgtttgtgtacgGATTAGCGAATTTTAATCCAACAAATGACCCCGAAAACGACCAACCCCAAGGAAGGCTCTGAATACTGGTCTGCTGCTTCCTTATCTCACTTCGGTTATAGATACTTCAACAGCCTACATGCACATCAGGGTTTAATAAATGGGATTTAGTCTGTGTGAAGGAAAAAGGcctcaaatattttaatcagaactatgtggaatattttatttattatatttattttacaaaatggaaGCGTTTGTTTAGTCTTGTGATAATGAGAATATTTGCTATGGTTCTGTATTCactcaaaaaatatataatttttggtTCCATCATGCAACGTAAATATCTGTGAGACATGTTTATTCAAGTTAACGAGATAACATGACATGGCATAAAAGTCTGTAAATGTATACGCTGGGAGATGTGTTTGAGTGCcgtggaaaacaaaatgagcaagaTGACCTTtagctgctgtttatttttatttatcccCCTGAATACGATGAATTAATCACTAAAACGATCGGTAATCAAGTCAATGATGAGTCTGAATTAGGCAGCTGACATCTCCACTGTGAAGACAGGCGGGAGAAATGACCTGCGATTTGAATACCCTGGATAAAAATGATCACAGAGGCCTCGGTAACGGGATGTCACAAAGCCGAAGGAAATCCACTTAGCTATGTAATGATACTGTTATGGTGATGATTTGTTCCCAAAGTGACCTACAAGGAAGCAGAAACAGTGTTCAAAGTCAAAATCTCTCTCATcaagattataattatttattaaatgcattttttaagtgGGTTCAGTAGCGCAGATTCCCTATGTGAAGCCGAAGTCTTAttacacacatacgcacacccCCAGAAGGCAGTGTAAATCCAGTATTTTATTGATACATTCATGACTAAGATGTTAACTGGAGTTcataaaaagaagaaattatGTCTGCGGTGTTCAGTTTATTGTAAAGTATCcattttattgatgatgtggCTCATCAAAGCAATAGAACTAGAaatgtctgtattattttccttaGCACAAAACTATTAGCCAAATGTTTGTGGTGGCTGAAACAATACTCTGGGTTTAAGTATGTGGATTAGTTTTACAGTTACactttatatataacatatttgagtattattttaaatgtccaaaTTACAATTCTCAAATGTCACgtgtttaaattgcattttgaacAGTTGTAGTTTTACTATAAACTataatgtgaaacaaataaaatgtgccCGGGCAATTACGGAGAACCTGGTAAACGCAGGGCTGCATCAGGAGGCGACTGACGGAAACATTTCCTGTGACAACGTGCTTCGAAAGTCTCAAAATCTCCCCAAGGTGTGCAAGCTATGTGGCGTCCTCCGCACTCAACTCTTCATCGTTGTGTGTGACTATTGCTGTACTGTTATAATAGATCTGATCGGATGTTCTTGTATAAGAGTGCTTCTAATTTTGTAacttttaaatcataataaagtCTGAAACTCCC

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00551 PEMT; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144388 lncRNA downstream 40495 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 40596 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 40596 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 44474 5749783 ~ 5750043 (-) True G115278
TU144385 lncRNA downstream 46158 5747458 ~ 5748359 (-) True G115277
TU144448 lncRNA upstream 237187 6046030 ~ 6046618 (-) True G115332
TU144532 lncRNA upstream 408685 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 1192959 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1925254 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1933131 7741974 ~ 7742210 (-) True G115579
AMCG00018264 mRNA downstream 9617 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 48813 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 182042 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 427764 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 439594 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018263 mRNA upstream 72703 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 259460 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 319870 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018292 mRNA upstream 349437 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 411130 6219973 ~ 6231007 (-) True AMCG00018286
TU144300 other downstream 427763 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 490088 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 490129 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 506644 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1142905 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 141578 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 809632 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 829499 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1934375 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3430969 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile