RNA id: TU144484



Basic Information


Item Value
RNA id TU144484
length 719
lncRNA type sense_over
GC content 0.45
exon number 4
gene id AMCG00018272
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6155488 ~ 6160616 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTTCCCCGTACAGTCGTCCCCTCAGAACAAGGCCCCCTCCACGGAGGCAGAGGCTCGAATCTTCTGGCTGGGCCTCATCGTCTGTCCGCTCATCTGGACCGGCTTCTTTTTCAGCACGCTCTTCTCCTTGAAGCTGAAATGGCTGGCTCTGGTCATTGCGGGGATCTCTCTTCAGGCTGCCAATCTCTACGGCTATATCCGCTGTAAGGTTGGAGGCCAGGAAGGCATTACCACATCAGCTTCCTCCTTTCTAGGGCAGCAGTTTCCCCAGAGGcctgACATCATTTTTGGAGTGCTATGAACAGAAGACAATCCAGTACTGCAGTTGAACTGGGCCTGCAGGCAGAGTCGTCCAGTCTGTTGCCCGAGTTTTACAGCTGCATACAAGGAATGCAATGCCTACCATAGagatatttattatgtatatttatttttggtaactctatattttctttgaatattGCTGCTTTTGAATAGCACTGTTTAATATCGTTTTAATTTGTCAGtcatcatcataacaataaAAACGTTTCCTTTGCATTTACTGTGAGTTTTCACTTTTCAGTCGCTGCTGCTACTGATTTGCTAGAAGACACGTTAAATCCAGTCTGGTGGTTTATTAGTAGTGCATCACCAGGAATGTTAGTCTGTGCTTTCTTCTTGTGGCATATGAGACGAGCAGAACTCCTTGATACCTGTTTGGGAAAGAACATGTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144447 lncRNA upstream 111425 6046030 ~ 6046534 (+) True G115331
TU144281 lncRNA upstream 813012 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 840034 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 1057021 5095148 ~ 5100938 (+) True G115099
TU144096 lncRNA upstream 1343540 4814018 ~ 4814419 (+) True G115061
TU144512 lncRNA downstream 365231 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 457690 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 493634 6654122 ~ 6678353 (+) True G115439
TU144589 lncRNA downstream 498045 6658533 ~ 6667223 (+) True G115441
TU144612 lncRNA downstream 549994 6710482 ~ 6747438 (+) True AMCG00018280
AMCG00018273 mRNA upstream 32190 6125500 ~ 6125769 (+) True AMCG00018273
AMCG00018269 mRNA upstream 96378 6060961 ~ 6061581 (+) True AMCG00018269
AMCG00018270 mRNA upstream 117780 6036080 ~ 6040179 (+) True AMCG00018270
AMCG00018271 mRNA upstream 142732 5971814 ~ 6015227 (+) True AMCG00018271
AMCG00018268 mRNA upstream 194210 5952269 ~ 5963749 (+) True AMCG00018268
AMCG00018275 mRNA downstream 55737 6216225 ~ 6219216 (+) True AMCG00018275
AMCG00018277 mRNA downstream 88636 6249124 ~ 6249540 (+) True AMCG00018277
AMCG00018276 mRNA downstream 145907 6306395 ~ 6309843 (+) True AMCG00018276
AMCG00018278 mRNA downstream 178963 6339451 ~ 6365240 (+) True AMCG00018278
AMCG00018279 mRNA downstream 439110 6599598 ~ 6617618 (+) True AMCG00018279
TU144414 other upstream 206942 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 1394054 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1553970 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 1964845 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 3510185 2640846 ~ 2647774 (+) True G114551
TU144781 other downstream 1733139 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 1959290 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 2532876 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 3039169 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 3079323 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile