RNA id: AMCG00018274


Basic Information

Item Value
RNA id AMCG00018274
length 6408
RNA type mRNA
GC content 0.45
exon number 23
gene id AMCG00018274
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6068303 ~ 6124832 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGACTGGCTCTCTCGCACTTCCCCGTGTGTGTAACAACAATTGTAAAACTACACAGTCAAGTGTCCTTCGCGGTACAACCCGGATGTAGCAGCTCCAGTTCGCTGTCGTCTGTCTGAAGTCTTGTGCGGTTTCGGGGGGGGGGACTAATAATTGCTGTTATTTCCGAATGTCAATGCttcgtttatttatttcttgctaTGTTTGTTTTGATAGTGGCGGTTGTGTACTAATGTAACGCCTGctgtaaaacaaaccaaaccagaaAACACTGCTAGTGAGATCATGTTCGGCCGGTCAAGAAGCTGGGTGGGAGGGGGGCAAGGCAAATCCAAAAGCATTCACTCTCTGGACCATCTAAAGTATATGTATCATGTCTTAACCAAAAACACCACAGTGACGGATCACAACAGGAATCTTCTTGTGGAGACCATTCGATCCATCACTGAAATCCTGATTTGGGGGGATCAGAATGACAGCTCTGTTTTTGACTTCTTTTTGGAAAAGaatatgtttgcttttttcctgAACATCCTTCGACAGAAATCTGGTCGCTACGTCTGTGTGCAGCTCCTTCAGACCCTGAATatactttttgaaaatataagtcATGAAACATCTCTTTATTATCTTCTGTCCAACAACCATGTCAACTCAATTATTGTCCACAAGTTTGACTTCTCTGATGAAGAGATTATGGCATACTATATTTCGTTCTTGAAGACCCTGTCCCTGAAACTCAATAACCACACTGTGCACTTCTTTTACAATGAGCACACTAATGATTTTGCCCTGTACACGGAGGCCATAAAATTTTTCAACCACCCCGAGAGCATGGTCAGAATTGCAGTCAGGACAATCACCCTTAATGTGTACAAAGTGGATAATCAGCACATGCTTCACTACATCAGAGACAAAACTGCCGTTCCCTACTTTTCGAACCTGGTGTGGTTCATCGGGAGTCACGTCATAGAGTTGGACAAATGTGTGCAGACCGACGAAGAGCACCGAAACCGAGGGAAGCTCAGTGACTTGGTGGCAGAACACCTTGACCATTTGCACTATCTCAACGACATCCTGATCATTAACTGTGAGTTCCTGAACGATGTCTTAACAGACCATCTCCTCAACAGACTATTCCTGCCCCTCTACGTCTACTCCTTAGTCAATCACGAGCAGACAGAAGATCGGAAGATAAGCCCTCAGGTGTCTCTGTACCTCCTGTCACAGGTGTTCCTTATAATACACTACCAGCCACTGGTCCACTCCTTGGCTGATGTCATTCTCAATGGAGACCTGTCTGTGTTCTCAGCCCAAGCAGAACAAGATGTACAGAAAAGCTGTTTGAATGCCAGTGTCCGGCGATTCACGAAGCCTGCCGAGAGTTTGGAGCGGTCCTTGGAAATAAATCGACGGCGAGGGAAGAAGAAGGTGCAGAAAAGACCCAACTATAAGAATGtgggtgaggaagaggaggaggagaaaggcCCCGAGGAGGGAATGGAAGACTCAGACAAGGCTAAAGGTACAGAGGCTAGTTCAAAAGGCAGCAAGACGAGTGGGGACACAGAAGAAATTGAGATGGTGGTAATGGAGAAGTGTAAGATTTCGGAGCTCTCGGGCTTGACGGAGCAGAACACGACGGATGAAGAGAAGACCGCTGCGGCCGCGGCCGGGACGGAGGCCCAGAGGAGCAGGCCTTTTTTGGACATGGTTTATAACGCACTGGACTGCACTATGGACGATTACTACGCGCTCTTTGTCCTGTGTCTCCTTTATGCCATGTCCCATAGCAAAGGTATCAACCCACAGCTCCTGGAGAAGATCCAGCTCCCCGTGCAGGAGGTGGAGAGGACCTCCTACAGCCAGGTGCTGGCTGAGAGACTCATTAGGGTGATGAACCAGGCCTGCCAGCCAGATGGGAAGGTCCGTCTGGCGACTCTCGAACTCAGCTGTCTGCTGCTCAAGCAGTTGGTTCTCTCGGGCAACAACTGCATCATTAAAGATGTCCATCTTGCCTGCTTAGagGGTGCCAGAGAAGAGAGTGTTCTTCTCTTGCGGCGCTTTTACAAGGGGGAAGAAATATTCTTGGACATGTTTGAAGATGAGTACAGGAGTATGacgAGTAAACCTCTGAACGTAGAGTATCTTATGATGGACGCCTCAATTCTGCTTCCCCCGACTGGTACCCCCCTGACTGGGATTGACTTTGTGAAGCGGCTCCCCTGTGGAGATGTGGAAAGAACAAGAAGGGCAATCCGTGTGTTCTTCATGCTGCGCTCGCTGTCCCTGCAGCTGCAGAGCGAGCCAGAGACGCAGCTTCCCCTGACCAGGCAGGAAGACCTCATTAAAACTGATGATGTGTTGGACCTGAATAACAGTGACCTGATTGCCTGTATGGTTGTGACAAAAGATGGTGCTCAAGCTCAGCGCTTCCTGGCGGTGGACGTGTATCAGATGAGTCTGGTCGAACCTGAAACCAAGCGTCTGGGATGGGGAGTGGTGAAGTTTGCCGGTTTGCTACAGGATATGCAAGTGTCAGGGGTTGAGGATGACAGTCGTGCCCTGAACATCATCATCCACAAGCCCACCTCCAATCCCCACGCCAAACCCTTCCCCATTCTGCAGGCTAATTTCATCTTTGCCGACCACATCCGCTGCATCATCGCAAAACAGAGGCTGGCCAAGGGTCGTATCCAAGCCCGGCGCATGAAAATGCAGAGAATAGCGGCCCTCCTGGATCTCCCTGTCCAGCCATCCTCGGATGTCCTGGGCTTCGGCCAGGGCGCGGCTGCTTCCTCTCAGCACCTGCCCTTCCggttCGCCGTGGCCCAGTGTATAAACCAGCACAGTCCGTCCCCACtgtcctccccctcccctccttccAGCGCCAGCGGCAGTGGGAGCACGGGGCACTGCGACTCAGTCACCGCCAGCACCATCTCCACCCCGTCTGCTGCTCAGAGCCCCTCAGCAGATGACCCCACTTTCCAAGAACAAACCCAGGCCTCCTTCCCGGAAGCAGTGGATTTTGGGGAAGAGACTGGCTCTGTAGTTTCCACTCCCGGCAAAGGTCAGAGTAGGGTCGTGGACGCCGGTGTGGCCCCCACCTTGGCCCCCAGTCTCACCCCGGCCCACCAGCCCACCATCTCGCTCATCTCTGACGACAACACGGATGCCCTGAGCGTGGAGTCGCTGACTATCCTGCCGCCCACCGACCCCACGCGACTCCGCAGCTTCAGCACGCAGTCTTCCACGCAGTCCGAACCCCGAGAGGGCCCCCGAGAGGAGGAGGCCAAGGCTGAGACCGAGGAAGACATGCAGGCCATTGGAGATGCAgccacaacaccaccaccaacaacaccacaaccaccaccatcgcagcagcagcagcacgtTGTAGACACGGACCAAGGCCCTCAAGGCTAGGTACCTATTGGGCATCTTTGTTAAAGTACACCCTACAGCGACGGAATGGATAGCAACCAACCTCCATTCCTTACTGTGTAAATAGACATCAGTTTTGTACAGAAAAGAGACATTTACAATGTTGTGGCTATTCTGCTTATATAATTGAATTTTTTCACTTGACATCTttccccgccccgccccgccaAGACATTTGAAAGCTTCTAATGAATTTTATCTACACACGAaggttttcagttttgtgtgtctttgtaagCTTTGCAGGCAACTGAAGACAGAAGCGCAGTGGAGTCAACTGGCATCTTTCCTCTAGAGATACAGCGATCAACTTTTAGACAGGTAGTTGTTTCTGTAAGTGAATGTGCCCAGTGGGGACTGGAGTCTGTTTTCCTGTATCTTTCTACTGCTGGCCAACTGATAAATGtaccatttaaaacaacattacatGGATACAAAAAACAAGTCATGATTTCAAGAGAATGAGAAGGAAATGAGAACTGTACACGGTAATAGATCCTGAATATACAGTAATAGTTTTGGTACACCTGCAGTAAATGATTAGAAATAGGATATTTTATCAATAATAAAcgcaaatgaaaacagaaatgaatcATCGGATTCTGCCTTTTATTAAGAAGGAAGTTTAGACACGAAcgcaaaaacttaaaaaaattcCGGTACTGCCTGTTCCAAAGACATCCGTTAATTTATTTGATCAAGTATCAGTAGTGATCAATGAAAGACCAGTCACTGATTAGACTAATGTGGATCCTTGATTCGGCCCAACTTCCCACAGATTAATTCTCCAACCTAATCATAGATGCGCTTCCACAGATTTGAAGTTTGCAGCACGTGGGTCGGCTTCAGTGAGATCTGTCTAGATTTTTGTACGTTGTAAGATACCATGTCCAGAATCTTTTTTTGCTTACCGAATCACCGCAGTTTGATTTGCCCATGGACTTGTAAAGATTTGATTTGAGGACGGATTCATCTCTGATCTCTCATCAGAAAGCAGTTGACAACATGAACTGAGAATATTGAAGTCCTATATTTGAGAGAAACCTTGCTAATGCTGTACTACCTGTTCACCATTTAGTTGTTTTAATACCTAGTTGTTTCCTGTTCATATGCCTGTGAAGATTGGGCGGATTAACACTTAGGGCTACTCACTCTTACCACTagtagaaaaataatttaagagaTTAAAGAGACCACTAAGCTTTTTCgtcttaaaatgtttctttctcaCAACTTTAAATTAACCGATGATGTTAAGTGAATCTGACAGGGTGTTTATTTGCAAAGCTAACAAATTTATTGTCCTTCCATTGTTCAAGAGTTAGCAGTACCTTCAGGAAGATTAGtcagaggtttttgtttttccccacttGTGTCTCTAACTTTAACCGCATTAAGGTGTTATAAGATTAGCTGAACCAATACTCAAATGGTCAAAAGATTAGGATTGCATGAGCAGAACTAGACCGAAAAACTCTCCTGGAGCTGTGATGGGCTTAAATATGTCGATAATTGTGATGAATAAAGGTTTCAGTCAAATGCTAGCagattttttcttattttttttttccagttctgaTGAAGGTaatatatttccaaataaatCAGATTATGCAGATTCTTGCTTTATTGGTTTCCAGTTAATTCCGGAAACACATTTGATGTGGTCACTTTACTGTGagtcttattttctttcaaacatgaaaagaaGAAGTACCTACACCATTACAATTTTAAGGAAGTACAAGaacttttactttgtttttgcttttcacttatttcaatcacaaaacaatttattttcattaatgcGAAGATCTTTTcaggttgtttgtgttttaattcctTCCCACCCATGGTAATGTCTGAAATAGCTGTGACACAGTCTTAGCCGATGACACAGCGCTGAATCGGCGCAGACTTGCTGTCAATCTAAACTCCATTTTAGGGATAACAGACACATCAGCAGACAGTGTGACATCAGGTGCAGAAAGCCTATAACATTGTGTCTATTGTGTCAGCCTGTTTTAAGCTATTCTGAAATGGTTTAAACGCAATACTAGTCTTCTGTGctacattattaaaacaatactgtaaaaaaatgtactttttggCATGTGGAAGCTGGGCAACATGGCAGGAAattctttgctttgtttaacTGGCAGGACGAAACTGgaacttattttaaacaatcaCTAATTCTGGTTGGGGCCTTCAAGAATGCAGGCTATTTACACTATTTTTTTGTCTCCCATCTACGTATCTCATGAACTTCATAATAGTGAGTTAAAACACAGTGCAGTTTGTAAGGACTCCCTGCGCTGCTCTTTGATCCAGATTCCCTcgagtttcttgtttttttttttttttttagaacaaaAGGGTTGGGATCCCATTTACCAGACCAGACCAGAAAACAACATATTGCCACATTGGCTGGCAGACTTAGTTTTTTCCCTACAATACTGTAGTGATTTTGTTGCGGTGATTGGCTAGGCTGAAATTCCTTAATTATCTAGAATATCTGTTATGTTTCCCTCACAGTTCCTCACTCACTTTCGTATATTGAATGCATCGTGGCTGTCAAAACAGTTAGCAACTGGGTCAACACACCTGGTAAGGTTCAAGGTTTATTTGACATTTCTCCAATATTCTTCAGGCTCAATCAGTATGTGATCCTGGAATTCTGACATTCTCAGGATGATTTCAGTCATGGACAAATGCTGGCCTTGGGCAAAATGAGTGAATTTAAAGCAATACTTCAGCAAATATTTCAGGAAACACTTTCTTGCCTAAAAAGGGCAGTGttttcacttgtgtaaattgtatgcATATCAAAAAAGCAATTCTTCTTAGTGTTTCTGTATTAAAGTGCTACTTGCTTTTCATCTGTATACAAACATTACCAATGGAACTTGTTAACGGAGAATTgcaataaattattgtattcagTGATGG

Function

GO: NA

KEGG:

id description
K19513 CLEC16A; protein CLEC16A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144448 lncRNA downstream 21685 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 314281 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 314382 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 314382 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 318260 5749783 ~ 5750043 (-) True G115278
TU144532 lncRNA upstream 92696 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 876970 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1609265 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1617142 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1617709 7742541 ~ 7742747 (-) True G115580
AMCG00018263 mRNA downstream 182303 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018265 mRNA downstream 259460 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018264 mRNA downstream 283403 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 322599 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 455828 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018289 mRNA upstream 3881 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018292 mRNA upstream 33448 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 95141 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 184537 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018283 mRNA upstream 460144 6584976 ~ 6593102 (-) True AMCG00018283
TU144435 other downstream 117248 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 701549 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 763874 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 763915 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 780430 5286386 ~ 5287873 (-) True G115174
TU144568 other upstream 493643 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 513510 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1618386 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3114980 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3794214 9919046 ~ 9924582 (-) True G116165

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051413 True 1245 mRNA 0.45 11 NC_007114.7 26859765 ~ 26904774 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_00411079_00477452.mRNA True 4633 mRNA 0.48 30 CI01000069 410292 ~ 477452 (-)